Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C06
         (1442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.23 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.69 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   8.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
 Frame = +1

Query: 655 PPXXPXAPXVPXPSXXSXLXLXS-SPLXPXSLXLTPXXXXXXXXAXPPPXXPPXXXLPPX 831
           P   P  P +P PS  S   + S +P  P SL   P           PP  P      P 
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSL---PPPAQPAAPVKSPPSAPSLPSAVPP 196

Query: 832 XPPXXPP 852
            PP  PP
Sbjct: 197 MPPKVPP 203


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 790 PPPXXPPXXXLPPXXPPXXPP 852
           PPP  PP    PP  PP  PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 790 PPPXXPPXXXLPPXXPPXXPPXF 858
           PPP  PP    P   PP  PP +
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGY 32


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
 Frame = +1

Query: 622  PPXDXXXASXXP-PXXPXAPXVPXPSXXSXLXLXSSPLXPXSLXLTPXXXXXXXXAXPPP 798
            PP      +  P P    AP VP PS  +      S   P               +  PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 799  XXPPXXXLPPXXPPXXPP 852
               P   +PP  PP   P
Sbjct: 1181 VPKPAAGVPPVPPPSEAP 1198



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
 Frame = +1

Query: 622  PPXDXXXASXXP-PXXPXAPXVPXPSXXSXLXLXSSPLXPXSLXLTPXXXXXXXXAXPPP 798
            PP      +  P P    AP VP PS  +      S   P               +  PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199

Query: 799  XXPPXXXLPPXXPPXXPP 852
               P   +PP  PP   P
Sbjct: 1200 VPKPSVGVPPVPPPSTAP 1217



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/68 (25%), Positives = 23/68 (33%)
 Frame = +3

Query: 1236 PLPXPLXXXXXXXPXPXAXFAXXPXXXAPSGPVXMXSNSSXXPAPXPSXLLXXXXSXXXX 1415
            P+P          P   A  +  P   APSG   + + S   P P PS            
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA 1110

Query: 1416 LLXPPSPS 1439
            +   P+PS
Sbjct: 1111 VPPVPAPS 1118


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 790  PPPXXPPXXXLPPXXPPXXPPXFXSXXXXSPNXR 891
            PPP  PP    PP  PP   P   +    +P  R
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
 Frame = +1

Query: 622 PPXDXXXASXXPPXXPXAPXVPXPSXXSXLXLXSSPLXPXSLX-----LTPXXXXXXXXA 786
           PP         PP    +     P   S   + + P  P ++        P        +
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413

Query: 787 XPPPXXPPXXXLPPXXPPXXPP 852
            PP   PP   LPP  PP  PP
Sbjct: 414 TPPVPTPPS--LPPSAPPSLPP 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,229
Number of Sequences: 5004
Number of extensions: 10675
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 804807090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)