Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C02
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       33   0.30 
05_07_0219 - 28474661-28475146,28475979-28476644                       29   3.7  
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    28   8.6  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 398 PXXXXXXPPXPXGXTPXGPPXXXFFSXXFXPXXPPPGAXFXXXPPXFFXP 547
           P      PP P    P  PP    F     P  PPP   F   PP F  P
Sbjct: 238 PFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPP 287



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/84 (25%), Positives = 21/84 (25%)
 Frame = +2

Query: 419 PPXPXGXTPXGPPXXXFFSXXFXPXXPPPGAXFXXXPPXFFXPXXXKTXXXXXXXXXXFX 598
           PP P    P   P   F    F    PPP   F   P  F  P                 
Sbjct: 210 PPWPWPPIPFCTPRPWFPPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPW 269

Query: 599 GPPXIXFFX*KPPRXKXPKXXXKP 670
            PP    F   PP    P     P
Sbjct: 270 APPPAFPFPHLPPIFSPPSPPPPP 293


>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 86  APRHGPPPLGSCTRARSQLAXHRNSSRMATSSVKSNGTV*XPVTXXT-----WPRP 238
           AP   PPPL + T      +   +SSR AT++  +  T   P    T     WPRP
Sbjct: 73  APPPSPPPLSATTPHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLLWPRP 128


>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 179 TTXPFGCYF-CXKRAESEREYNCRVEAGH--VEERRV 78
           TT P G  F C +RAE  RE+  ++E  H  +EE ++
Sbjct: 261 TTVPAGPVFRCTERAEKRREFYMKLEEKHQALEEEKI 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,507
Number of Sequences: 37544
Number of extensions: 331355
Number of successful extensions: 1472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)