Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C02
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    34   0.15 
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    34   0.15 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    28   7.7  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   7.7  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     28   7.7  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/85 (27%), Positives = 23/85 (27%)
 Frame = +2

Query: 398 PXXXXXXPPXPXGXTPXGPPXXXFFSXXFXPXXPPPGAXFXXXPPXFFXPXXXKTXXXXX 577
           P      PP P G  P  PP   F      P   PP   F   PP  F P          
Sbjct: 290 PPPFGFFPPPPRGHFP--PPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGG 347

Query: 578 XXXXXFXGPPXIXFFX*KPPRXKXP 652
                F  PP        PP    P
Sbjct: 348 PYPPFFPPPPPHFMRPSSPPTDGGP 372



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/87 (26%), Positives = 24/87 (27%)
 Frame = +3

Query: 378 PQGXKGPPXGXXFXPPPXXXXPPXAPPXXXFFXXFXXXXXPPXXXXFXGXPXXFFXXXXX 557
           P     PP G  F PPP    PP  PP             PP      G P  F      
Sbjct: 285 PYAMMPPPFGF-FPPPPRGHFPP--PPPHFMGRGMPPPFMPPPPHFGMGPPRGFM-PPPH 340

Query: 558 XXXXXXXXXXXXFXAPPXXFFFXKNPP 638
                       F  PP  F    +PP
Sbjct: 341 PMMFRGGPYPPFFPPPPPHFMRPSSPP 367


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/85 (27%), Positives = 23/85 (27%)
 Frame = +2

Query: 398 PXXXXXXPPXPXGXTPXGPPXXXFFSXXFXPXXPPPGAXFXXXPPXFFXPXXXKTXXXXX 577
           P      PP P G  P  PP   F      P   PP   F   PP  F P          
Sbjct: 290 PPPFGFFPPPPRGHFP--PPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGG 347

Query: 578 XXXXXFXGPPXIXFFX*KPPRXKXP 652
                F  PP        PP    P
Sbjct: 348 PYPPFFPPPPPHFMRPSSPPTDGGP 372



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/87 (26%), Positives = 24/87 (27%)
 Frame = +3

Query: 378 PQGXKGPPXGXXFXPPPXXXXPPXAPPXXXFFXXFXXXXXPPXXXXFXGXPXXFFXXXXX 557
           P     PP G  F PPP    PP  PP             PP      G P  F      
Sbjct: 285 PYAMMPPPFGF-FPPPPRGHFPP--PPPHFMGRGMPPPFMPPPPHFGMGPPRGFM-PPPH 340

Query: 558 XXXXXXXXXXXXFXAPPXXFFFXKNPP 638
                       F  PP  F    +PP
Sbjct: 341 PMMFRGGPYPPFFPPPPPHFMRPSSPP 367


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +3

Query: 363 FXGGXPQGXKGPPXGXXFXPPPXXXX--PPXAPPXXXF 470
           + G  P G   PP G  F PPP      PP APP   F
Sbjct: 733 YPGYGPPGAMRPPAG--FAPPPGAPYGYPPGAPPPAGF 768


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 391 KGPPXVXXFXPXPXGXNPPGPP 456
           KGPP +  +   P    PPGPP
Sbjct: 157 KGPPGIKGWPGFPGDVGPPGPP 178


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 391 KGPPXVXXFXPXPXGXNPPGPP 456
           KGPP +  +   P    PPGPP
Sbjct: 194 KGPPGIKGWPGFPGDVGPPGPP 215


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 391 KGPPXVXXFXPXPXGXNPPGPP 456
           KGPP +  +   P    PPGPP
Sbjct: 178 KGPPGIKGWPGFPGDVGPPGPP 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,705
Number of Sequences: 27780
Number of extensions: 244261
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)