Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C01
         (1075 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.030
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.64 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 213 PPXXPPPPGPXPPXXXPPPP 272
           PP  PPPPG  PP   PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +3

Query: 213 PPXXPPPPGPXP---PXXXPPPP 272
           PP  PPPP P P   P   PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
 Frame = +3

Query: 207 PXPPXXPP---PPGPXPPXXXPPPP 272
           P PP  PP   PP   PP   PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP---PPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +3

Query: 213 PPXXPPPPG---PXPPXXXPPPPXGKXGG 290
           PP  PPPPG     PP   PPPP    GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 207 PXPPXXPPPPGPXPPXXXPPPPXGKXG 287
           P PP  P   GP PP    PPP G  G
Sbjct: 750 PVPPPAPIMGGPPPP----PPPPGVAG 772


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 207 PXPPXXPPPPGPXPPXXXPPPP 272
           P PP  PPPP P P    P PP
Sbjct: 3   PAPP--PPPPAPAPAAAAPAPP 22


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 213  PPXXPPPPGPXPPXXXPPPP 272
            PP    P  P PP   PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP 1718



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 207  PXPPXXPPPPGPXPPXXXPPPPXG 278
            P PP  PPP    PP   PP P G
Sbjct: 1705 PTPP--PPPMSVPPPPSAPPMPAG 1726



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 207  PXPPXXPPPPGPXPPXXXPPP 269
            P PP  PP P   PP   PPP
Sbjct: 1715 PPPPSAPPMPA-GPPSAPPPP 1734



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 213  PPXXPPPPGPXPPXXXPPPP 272
            PP    PP P  P   PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 207  PXPPXXPPPPGPXPPXXXPPP 269
            P PP   PPP   PP    PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 277 PXG-GGGXXXGGXGPGG-GGXXGGXG 206
           P G GGG    G GPGG GG  GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 207  PXPPXXPPPPGPXPPXXXPPPP 272
            P PP    PP P P    PP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVP 1211



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 207  PXPPXXPPPPGPXPPXXXPPPP 272
            P PP    PP P P    PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVP 1230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 868,669
Number of Sequences: 5004
Number of extensions: 7497
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)