Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B24
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 723 PXPPXXPPPPPXXXXP 770
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 720 PPXPPXXPPPP 752
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 731  PPPPPPXP 754
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +2

Query: 671 GAPXXXXPPXPXXXXXXPXXPPPPPPXPXXXXPPXXXPPPXP 796
           GAP     P           PP P   P    PP   P   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 731 PPPPPPXPXXXXPPXXXPPPXPXXXXPPPXP 823
           P P P        P    PP P    PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +1

Query: 700 PXXXXPXPXXPPXXPPXPXXXLSPXXPPXPXPXXXPPPXXXXPPXXXP 843
           P    P P   P   P      SP  P    P   PP     PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP---GAPPSQNP 60


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 731 PPPPPPXPXXXXPPXXXPPPXPXXXXPPPXP 823
           P P PP P     P   P        P P P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 137



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 731 PPPPPPXPXXXXPPXXXPPPXPXXXXPPPXP 823
           P P PP P     P   P        P P P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,886
Number of Sequences: 438
Number of extensions: 9271
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)