Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B23
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    71   2e-13
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    44   3e-05
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    44   3e-05
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    31   0.28 
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   4.6  

>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
 Frame = +2

Query: 239 QRLKRRRIPXKTKWTKAYRKTAGKELSIDPSFEFEK-RRNVPLKYNRELWTKTIEAMKKV 415
           +  K +R P K  WTKAYRK  GKE+  D +      RRNVP++Y+R +   T+ AMK+V
Sbjct: 38  KNFKMKRNPRKVAWTKAYRKAHGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRV 97

Query: 416 EEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSP-----AAGLKQRQALXATE 580
            ++  +R   +  +RL   R  E Q   + + +++     P      A +++ Q +   E
Sbjct: 98  SQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNVPQFTEPEGEVETAEVQEPQIVSDEE 157

Query: 581 MEVEPETIEVV 613
             +E E  E V
Sbjct: 158 YTMEEEVAEPV 168



 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 28/35 (80%), Positives = 30/35 (85%)
 Frame = +1

Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 267
           VYPGHGI FVRND K+FRFCRSKCH  FK K+NPR
Sbjct: 13  VYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPR 47


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +1

Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 267
           VYPG G  FVR D K+FRF   K  + F ++KNPR
Sbjct: 13  VYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +1

Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 267
           VYPG G  FVR D K+FRF   K  + F ++KNPR
Sbjct: 13  VYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 248 KRRRIPXKTKWTKAYRKTAGKELSIDPSF--EFEKRRNVPLKYNRELWTKTIEAMKKVEE 421
           KRR+I    KW +   +  GK+L  +     +  +R+    K + + W +  +  KK   
Sbjct: 140 KRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAML 199

Query: 422 IRQRRSNNYIMQR 460
           +RQ+R    + +R
Sbjct: 200 MRQQRREENLKKR 212


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 24/117 (20%), Positives = 54/117 (46%)
 Frame = +2

Query: 260 IPXKTKWTKAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRS 439
           +P K K +K     A ++  +  SF   +++  P K  +E   + I+A  K     +   
Sbjct: 64  VPEKQKTSKLALLAAERK-KLHSSFPSTQQQ--PPKTEKEKEKEPIQAKHK-----KNVE 115

Query: 440 NNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQALXATEMEVEPETIEV 610
           N++++QR R+ R  E +   +    +I L         Q+Q + + +++  P+ +++
Sbjct: 116 NDFLLQRFRKVRIAEKKDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQEVKL 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,698
Number of Sequences: 5004
Number of extensions: 60368
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)