Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_B23
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 91 8e-19
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 90 2e-18
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 40 0.002
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 40 0.002
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 40 0.003
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 35 0.074
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 30 2.8
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 29 4.9
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 29 4.9
07_01_1161 - 10991245-10991283,10991389-10991427,10991513-109917... 29 6.4
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 29 6.4
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307... 28 8.5
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 91.5 bits (217), Expect = 8e-19
Identities = 41/125 (32%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Frame = +2
Query: 239 QRLKRRRIPXKTKWTKAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVE 418
+ K +R P K KWTKAYR GK+++ D +FEFE++RN P +Y+R + +T++A+ +
Sbjct: 38 KNFKMKRNPRKVKWTKAYRCLHGKDMTQDSTFEFERKRNRPERYDRNVTEQTLKAISLIT 97
Query: 419 EIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLI--KSPAAGLKQRQALXATEMEVE 592
+IR R +I +R +QG+ + +RD +E+++DI ++ K + K + + ++ + E
Sbjct: 98 KIRHERQKKHITERQKQGKTKQRERDAKELEQDIQMLPKKVTLSTQKTKVVVKVSQQQTE 157
Query: 593 PETIE 607
+E
Sbjct: 158 ENLME 162
Score = 73.3 bits (172), Expect = 2e-13
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +1
Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 267
VYPGHGIQFVRND KIFRFCRSKCH FK K+NPR
Sbjct: 13 VYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPR 47
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/97 (38%), Positives = 66/97 (68%)
Frame = +2
Query: 239 QRLKRRRIPXKTKWTKAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVE 418
+ K +R P K KWTKAYR GK+++ D +FEFE++RN P +Y+R + +T++A+ +
Sbjct: 76 KNFKMKRNPRKVKWTKAYRCLHGKDMTQDSTFEFERKRNRPERYDRNVTAQTLKAIPLIT 135
Query: 419 EIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLI 529
+IR R +I +R +QG+ + +RD +E+++DI ++
Sbjct: 136 KIRHERHKKHITERQKQGKTKQRERDAKELEQDIQML 172
Score = 41.5 bits (93), Expect = 9e-04
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 208 IFRFCRSKCHAAFKKKKNPR 267
IFRFCRSKCH FK K+NPR
Sbjct: 66 IFRFCRSKCHKNFKMKRNPR 85
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNP 264
+YPG GI+F+R D ++F F SKC F + P
Sbjct: 15 IYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKP 48
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNP 264
+YPG GI+F+R D ++F F SKC F + P
Sbjct: 1025 IYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKP 1058
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 263 PXKTKWTKAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 412
P K WT YRK K++ + ++RR Y+R + T+E ++K
Sbjct: 1058 PAKLTWTAMYRKQHKKDIHAEA--VKKRRRTTKKPYSRSIVGATLEVIQK 1105
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 163 VYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNP 264
+YPG GI+F+R D ++F F SKC F + P
Sbjct: 41 IYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKP 74
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 263 PXKTKWTKAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 412
P K WT YRK K++ + ++RR Y+R + T+E ++K
Sbjct: 74 PAKLTWTAMYRKQHKKDIHAEA--VKKRRRTTKKPYSRSIVGATLEVIQK 121
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 35.1 bits (77), Expect = 0.074
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = +2
Query: 362 LKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPA 541
L+ ++W + +K+ E ++ S + QR Q E WQR R++++ + +K
Sbjct: 298 LRGEAKMWQRKTRKLKQGLETLKKVSTDKSKQRSEQDLEKMWQRKTRKLKQGLETLKKEC 357
Query: 542 AGLKQRQALXATEMEV 589
A ++Q+ E+ +
Sbjct: 358 ADKSKQQSELELELSI 373
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +2
Query: 173 DTESNLSGMTAKFSDSVVQNATQRLKRR-RIPXKTKWTKAYRK-TAGKELSIDPSFEFE- 343
D+ S+ G +S+ A ++L R R+ + K+ + T G+++ I + E E
Sbjct: 454 DSASDDEGADNHGDESLQSGAKRKLTREERLALLLQGDKSEEEQTDGEDMEITFNTELED 513
Query: 344 -KRRNVPLKYNRE--LWTKTIEAMKKVEEIRQRRSNN 445
+R + K N E +W K E MK+ + R+RRS +
Sbjct: 514 LSKRILDRKVNNEKTVWEKHQEKMKEKRKSRKRRSKD 550
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 493 RRARSPERHLFDKVTSGWSETATSFXSHRNG 585
RRARSPER L ++ W TA+S S R G
Sbjct: 88 RRARSPERALVRRIAREW--TASSRTSPRGG 116
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +2
Query: 152 FIQGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPXKTKWTKAYRKTAGKE--LSID 325
F ++L T+ + V +++KR R+P + K Y G++ LS
Sbjct: 450 FCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRVPNRNKDKTPYEIWIGRKPSLSYL 509
Query: 326 PSFEFEKRRNVPLKYNRELWTKTIEAM 406
++ + NVP+ R+L KT++ +
Sbjct: 510 RTWGCLAKVNVPITKKRKLGPKTVDCV 536
>07_01_1161 -
10991245-10991283,10991389-10991427,10991513-10991738,
10991902-10992054,10992133-10992638,10992651-10993019,
10993107-10993553,10993752-10994339
Length = 788
Score = 28.7 bits (61), Expect = 6.4
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 12/148 (8%)
Frame = +2
Query: 179 ESNLSGMTAKFSDSVVQNATQRLKRRRIPXK-TKWTKAYRKTAGKELSIDPSFEFEKRRN 355
E +++ +T K S RL+R T W K G E +P+ + R
Sbjct: 72 EKDIAWLTFKESFDYPAEHEDRLRRAAFKVMGTAWKNFKTKLVG-EFVYNPAIP-DPREK 129
Query: 356 VPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQ-----------GREVEWQRDVR 502
P ++W++ A K E R R ++Q Q G+E EWQR+
Sbjct: 130 FPW-ITEQVWSE-FHAKKSTPESRARSEAYRLLQTRNQHPHRLGTAGYDGKEEEWQREDE 187
Query: 503 EVQRDISLIKSPAAGLKQRQALXATEME 586
E + + +K A + Q A E
Sbjct: 188 EAEESCTPLKELVAEQQAPQEACAQRRE 215
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 28.7 bits (61), Expect = 6.4
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 170 LDTESNLSGMTAKFSDSVVQNATQRLKRRRIPXKTKWTKAYRKTAGKELSIDPSFEFEKR 349
+D + ++ + A+ D ++ + KRR+ + K + RKT K D +
Sbjct: 117 MDVAATVNDVGAEVKDDEMEAESAAPKRRK---RKKEKEKERKTTSKVAEADAK---KPP 170
Query: 350 RNVPLKYNRELWTKTIEAMKK-VEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRD 517
R+V + K E ++K EE+R+R++ +QR R VE + +++ +RD
Sbjct: 171 RHVRVMLEVLAKRKEAEELRKREEELRKRKAEEERLQREEDERMVE-EMKMQQKERD 226
>02_05_0841 +
32129863-32130294,32130395-32130459,32130565-32130774,
32130943-32131024
Length = 262
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +2
Query: 152 FIQGFILDTESNLSG--MTAKFSDSVVQNATQRLKRRRIPXKTKWTKAYRKTAGKELS-I 322
F+ G + D ES+L+G ++ S + Q+ R +IP + + E
Sbjct: 174 FLPGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEAEAKRF 233
Query: 323 DPSFEFEKRRNVPLKYNRELWTKTIEA 403
+ F+ R VPL R WT + +
Sbjct: 234 AAKYNFDVVRGVPLDAGRFEWTPVVSS 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,118,825
Number of Sequences: 37544
Number of extensions: 381481
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -