Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B18
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.39 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/43 (41%), Positives = 18/43 (41%)
 Frame = +1

Query: 763 PXPPPAXPTPHXPXXXXPXFPPXGXXGGGXXXXXPPPPPXPXG 891
           P PPPA P    P    P  PP G  G G     PPPP    G
Sbjct: 750 PVPPPA-PIMGGPP---PPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
 Frame = +1

Query: 763 PXPPPAXPTPHXPXXXXPXFPPXGXXGG--------GXXXXXPPPPPXP 885
           P PPPA   P       P  PP    GG        G     PPPPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 763 PXPPPAXPTPHXPXXXXPXFPPXGXXGGGXXXXXPPPPP 879
           P P P    P  P    P  PP      G     PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
 Frame = +3

Query: 744 PPPPXXPXXPPXXXHPTQXXXPXPXF--PPXRXXRGGGXXXXSPPPPXP 884
           PPPP     P     P     P P    PP      G      PPPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +3

Query: 744 PPPPXXPXXPPXXXHPTQXXXPXPXFPPXRXXRGGGXXXXSPPPP 878
           P P   P  PP    P     P P  PP     G G     PPPP
Sbjct: 744 PAPAPIPVPPPA---PIMGGPPPP--PPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +1

Query: 763 PXPPPAXPTPHXPXXXXPXFPPXGXXGGGXXXXXPPPPPXP 885
           P PPP  P         P  PP     GG     P P   P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 865 PPPPPXPXGFXPP 903
           PPPPP P GF PP
Sbjct: 9   PPPPPPPPGFEPP 21


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +1

Query: 772 PPAXPTPHXPXXXXPXFPPXGXXGGGXXXXXPPPPPXPXGFXP 900
           PPA P P  P    P  PP G          P PP  P    P
Sbjct: 388 PPAPP-PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 784 PTPHXPXXXXPXFPPXGXXGGGXXXXXPPPPPXP 885
           P P  P       PP G   G      PPPPP P
Sbjct: 312 PPPPPPSRRNRGKPPIG--NGSSNSSLPPPPPPP 343


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +3

Query: 744  PPPPXXPXXPPXXXHPTQXXXPXPXFPPXRXXRGGGXXXXSPPPPXPXGXXP 899
            PP       PP    PT    P    PP            +PPPP P    P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +3

Query: 744 PPPPXXPXXPPXXXHPTQXXXPXPXFPPXRXXRGGGXXXXSPPPPXPXGXXP 899
           PPPP  P  PP   + +Q   P       R     G     PPPP      P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPS------RNVNNLGSQVNIPPPPATPSQPP 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,225
Number of Sequences: 5004
Number of extensions: 40015
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)