Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B17
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    27   2.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   8.0  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 354 VYVGDAVAHYDSTGHIREDANVLLAEGDNGFIFHFIVRRDDLSD 223
           +Y+  A A  D     R +  V+L EG NG +      R + SD
Sbjct: 180 IYIDSAKAMQDGVEFYRSENGVILTEGVNGLLSSKYFSRVETSD 223


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 130 CTALCIEDDIGYGLNIGNAIDLFANYGDLSQVTQVVSADYEMEDEPIIPFSEKNIRVFA 306
           C  LCI+    YG    + ++ + +Y  L    Q  +  +      + PF EK + +F+
Sbjct: 748 CVYLCIQKFESYGWGASSEMECYFSYCSLIFYYQATTLQF-YNLPKVRPFFEKGVTLFS 805


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,336
Number of Sequences: 5004
Number of extensions: 61071
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)