Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B17
         (870 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.       30   9.5  
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ...    30   9.5  

>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
          Length = 4186

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = +1

Query: 157  IGYGLNIGNAIDLFANYGDLSQVTQVVSADYEMEDEPIIPFSEKNIRVFANVSSRIVMGD 336
            I Y +  GN  +LF       ++T ++  DYE   E +I     +  + +  +  + + D
Sbjct: 1172 IMYQIVEGNIPELFQMDIFSGELTALIDLDYEARQEYVIVVQATSAPLVSRATVHVRLVD 1231

Query: 337  SITNIDVLLCENFEDLLNVYFQN 405
               N  VL   NF+ L N Y  N
Sbjct: 1232 QNDNSPVL--NNFQILFNNYVSN 1252


>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
            protein.
          Length = 3312

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = +1

Query: 157  IGYGLNIGNAIDLFANYGDLSQVTQVVSADYEMEDEPIIPFSEKNIRVFANVSSRIVMGD 336
            I Y +  GN  +LF       ++T ++  DYE   E +I     +  + +  +  + + D
Sbjct: 1102 IMYQIVEGNIPELFQMDIFSGELTALIDLDYEARQEYVIVVQATSAPLVSRATVHVRLVD 1161

Query: 337  SITNIDVLLCENFEDLLNVYFQN 405
               N  VL   NF+ L N Y  N
Sbjct: 1162 QNDNSPVL--NNFQILFNNYVSN 1182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,710,186
Number of Sequences: 237096
Number of extensions: 1973559
Number of successful extensions: 8193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8186
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)