Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B14
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.37 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.48 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   6.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 769 PXXPXXXPPPPXXXXXXXPPPPP 837
           P  P   PPPP       PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 789 PPPXXXXPXXPPPPPP 836
           PPP    P  PPPPPP
Sbjct: 14  PPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 768 PXXXXXXPPPXXXXPXXPPPPPP 836
           P      PPP    P   PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 778 PXXXPPPPXXXXXXXPPPPPXXXPAP 855
           P   PPPP       PP  P   P P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 790 PPPPXXXXXXXPPPPPXXXPA 852
           PPPP       PPPPP   PA
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPA 784



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 778 PXXXPPPPXXXXXXXPPPPP 837
           P   PPPP       PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 789 PPPXXXXPXXPPPPPP 836
           PPP       PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 789 PPPXXXXPXXPPPPPP 836
           PPP       PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 403 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 224
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 223 AAPEVPS 203
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 400 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 290
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 810 PXXPPPPPP 836
           P  PPPPPP
Sbjct: 942 PAFPPPPPP 950



 Score = 21.0 bits (42), Expect(2) = 6.7
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 792 PPXXXXPXXPPPPP 833
           P     P  PPPPP
Sbjct: 899 PTIITHPTPPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,062
Number of Sequences: 5004
Number of extensions: 41645
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)