Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B13
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 571  PPPPXPPP 594
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 424  RGXXPPPPXPPXXXG 468
            R   PPPP PP   G
Sbjct: 1351 RQQQPPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 873 PPXPPPXPXPPXXXPP 920
           PP P P P PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 567 PXPXPPPPP 593
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 441 PPXPPPXXGGP 473
           PP PPP   GP
Sbjct: 343 PPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,330
Number of Sequences: 438
Number of extensions: 9561
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)