Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_B12
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 31 1.7
02_01_0302 - 2021221-2023305 30 2.2
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 30 2.9
01_06_1277 - 35928705-35928824,35930051-35930129,35931711-35931790 29 3.8
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 29 5.1
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.7
11_06_0610 - 25449085-25453284 28 8.8
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 28 8.8
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 8.8
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 8.8
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 30.7 bits (66), Expect = 1.7
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = +2
Query: 536 LRPPDEHHK--NRRSSQRWRXPDRTIKIPGVSPWKLPRALSCSXPAAYRDTCPXFSPSGS 709
++PP+E RS R P ++ P +P A + S P A R P +
Sbjct: 111 VKPPEELSPVGAPRSRVRAMPPSPSLSPPAKAP-SHSHAKTPSMPPAERPALPPTKAPAA 169
Query: 710 VAPSHXSPLVXISXSGCRSXPSXLGLCAPNPPVPTPNRLRPYPGNXPS 853
++P+ L + L PPVP+P+ P P + PS
Sbjct: 170 ISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSPSPEHP-PRHSPS 216
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 638 PRALSCSXPAAYRDTCPXF-SPSGSVAPSHXSPLVXISXSGCRSXPSXLGLCAPNPPVPT 814
P+ S S +Y + +P GS PS+ SP + S P G + P P+
Sbjct: 415 PQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSSHSPPG--GSSSTTPSYPS 472
Query: 815 PNRLRPYPGNXPS 853
PN +P + PS
Sbjct: 473 PNGGKPSTPSHPS 485
>08_02_1458 - 27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 773 REXTYTRXWRYXPGVXYEKGPRFPKGRKXDRYPGKRQXRNRR 648
R T R + PG G ++ +G + DR G+RQ R+ R
Sbjct: 1310 RADTTPRSHTFEPGYHSSSGSQYDEGYEGDRRTGERQLRSMR 1351
>01_06_1277 - 35928705-35928824,35930051-35930129,35931711-35931790
Length = 92
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 851 TXSYRDKGASGSGLEPGGXGHTAPXWREXTYTRXWRYXPGVXYEKGPRFPKGRK 690
T + D G+ G G G GH T ++ PG+ +E R P+GR+
Sbjct: 8 TAALGDGGSGGGGGRRRGRGHLLQSMMPTRRT-CLQHCPGINFEHDQRVPRGRQ 60
>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
Length = 325
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = +2
Query: 476 KGQQKARNRKKXALLAFFHXLRPPDEHHKNRRSSQRWRXPDRTIKIPGVSPWKLPRALSC 655
K + AR RK A L +R H NRR W+ + P +KLP SC
Sbjct: 258 KKEYGARLRKTKAELK--KLVRSERGGHGNRRRCCSWKIKLPKCRFPKCCAFKLPSPSSC 315
Query: 656 SXPAAYRDTC 685
+ +R C
Sbjct: 316 CSCSCFRRCC 325
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 503
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +2
Query: 635 LPRALSCSXPAAYRDTCPXFSPSGSVAPSHXSPLVXISXSGCRSXPSXLGLCAPNPPVPT 814
+P + + S P + P +P S PS S S + S PS P+P T
Sbjct: 932 VPPSPAKSTPPPEEKSPPSHTPESSSPPSEESEPPP-SPTPKSSPPSHEEYVPPSPAKST 990
Query: 815 PNRLRPYPGNXPSLXS 862
P +P P + P++ S
Sbjct: 991 PPPEKPLPPHTPTINS 1006
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 724 MRRGHASRRGEXRTGIPVSGRXGTGER 644
+R GH R E +T +P+ G GER
Sbjct: 1229 LRPGHGHREWELKTAVPIVHHDGGGER 1255
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 662 PAAYRDTCPXFSPSGSVAPSHXSPLVXISXSGCRSXPSXLGLCAPNPP--VPTPNRLRPY 835
P Y P SPS + + P+V S P + P+PP VP+P + PY
Sbjct: 407 PPLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAPY-PSPPEIVPSPPEITPY 465
Query: 836 P 838
P
Sbjct: 466 P 466
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 542 PPDEHHKNRRSSQRWRXPDRTIKIPGVSPWKLPRALSCSXPAAYRDTCPXFSPSGSVAP 718
PPD H +RS + R P T P P SCS + + C +PS +V P
Sbjct: 261 PPDAH---QRSPRPIRTPVSTKLTSDSLPASSPPTSSCSDYSTITEACQQRNPSMAVKP 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,595,084
Number of Sequences: 37544
Number of extensions: 505694
Number of successful extensions: 1820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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