Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B12
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    28   7.9  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 686 PXFSPSGSVAP-SHXSPLVXISXSGCRSXPSXLGLCAPNPPVPTPNRLRPYPG 841
           P  +   SVAP S  +PL   S       PS     AP PP P P    PYPG
Sbjct: 272 PRIASKTSVAPTSSRAPLPPSSSFA----PSISASPAPAPPPPPPQAASPYPG 320


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 686 PXFSPSGSVAP-SHXSPLVXISXSGCRSXPSXLGLCAPNPPVPTPNRLRPYPG 841
           P  +   SVAP S  +PL   S       PS     AP PP P P    PYPG
Sbjct: 274 PRIASKTSVAPTSSRAPLPPSSSFA----PSISASPAPAPPPPPPQAASPYPG 322


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 650 SCSXPAAYRDTCPXFSPSGSVAPSHXSPLVXISXSGCRSXPSXLGLCAPNP 802
           +C+ P   R++   F+PS   AP+  +  + I+ S     PS     +P+P
Sbjct: 366 ACTSPQVQRNSAQLFTPSADQAPASSAQPIKINISLAPLKPSASTSSSPSP 416


>AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical
           protein F43E2.3 protein.
          Length = 631

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +2

Query: 599 RTIKIPGVSPWKLPRALS--CSXPAAYRDTCPXFSPSGSVAPSHXSPLVXISXSGCRSX- 769
           R IK+PG     + RALS   + P+  R   P  +P     PS+    V    S   S  
Sbjct: 80  RNIKLPGFRG-NISRALSQKSNSPSGCRTPTPKTAP-----PSYEQFQVLRRNSMKSSVQ 133

Query: 770 PSXLGLCAPNPPVPTPNR 823
           P   G+ +P PPVPT +R
Sbjct: 134 PQRNGILSPAPPVPTSSR 151


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
 Frame = +2

Query: 653 CSXPAAYRDTCPXFSPSG-SVAPSHXSPLVX---ISXSGCRSXPSXLGLCAPNPPVPTPN 820
           C  P      CP   P+     P   SP      +    C   P+    C P PP PTP+
Sbjct: 71  CGAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPS 130

Query: 821 RL 826
            L
Sbjct: 131 PL 132


>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 629 WKLPRA--LSCSXPAA-YRDTCPXFSPSGSVAPSHXSPLVXISXSGCR 763
           W LP    + C   A+ YRD     S S S++P H + ++  + +GCR
Sbjct: 215 WFLPNGDYIDCRDLASFYRDPTRPESSSQSISPEHAALMMKGTCTGCR 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,480,492
Number of Sequences: 27780
Number of extensions: 380544
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)