Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_B11
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.37
AF067947-5|AAO25993.2| 380|Caenorhabditis elegans Hypothetical ... 31 1.1
AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical ... 31 1.5
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 29 3.4
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 7.9
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 7.9
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 7.9
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 7.9
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 7.9
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 109 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 264
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>AF067947-5|AAO25993.2| 380|Caenorhabditis elegans Hypothetical
protein T10B5.2 protein.
Length = 380
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -1
Query: 642 RSRLLQXQVVVLIFKYWLYLVLWILKYTLCSPTR**TSN*RVQYAXLHHRRRQFSHSRDW 463
R L+ Q V I++Y Y +YT +P R + R + HRR+++ R W
Sbjct: 9 RLAYLKSQRVEHIYRYLQY------RYTCSAPQRKAARHLRWDWTLTRHRRKRYQKYRRW 62
Query: 462 LWNRASERG 436
+ RA + G
Sbjct: 63 MEGRAKKMG 71
>AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical
protein K09C6.7 protein.
Length = 587
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 567 KYTLCSPTR**TSN*RVQYAXLHHRRRQFSHSRDWLWNRASERGCS 430
+YT +P R + R + HRR+++ R W+ RA + G S
Sbjct: 144 RYTCSAPQRKAARHLRWDWTLARHRRKRYQKYRRWMAGRAKKMGLS 189
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 90 FSFVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVR 227
FSF +A+ +L A G + +DLE +LY +L DY+ R
Sbjct: 10 FSFNWALILLVAVGGTNAFKIKRTAKDLESQLYEDLLF-DYNKVPR 54
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 90 FSFVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVR 227
FSF +A+ +L A G + +DLE +LY +L DY+ R
Sbjct: 10 FSFNWALILLVAVGGTNAFKIKRTAKDLESQLYEDLLF-DYNKVPR 54
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 167 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 277
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 167 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 277
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 167 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 277
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 470 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 303
G GCG + +S +V +N D D+ ++E + EVL NN S LV+V +P+
Sbjct: 63 GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 608 STTTCXCNSRDRVVYXGNSADSTXEQWFF 694
+ TC C+S D ++ S D T W F
Sbjct: 912 AAVTCLCSSNDSSLFVSTSFDKTVNVWVF 940
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,296
Number of Sequences: 27780
Number of extensions: 365917
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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