Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B11
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.41 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   2.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 165 QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 335
           ++ E+++ ++IL G YD+ +R S E  + G   +  N+    I      TMEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 165 QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKL 335
           ++ E+++ ++IL G YD+ +R S E  + G   +  N+    I       MEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 636 RLLQXQVVVLIFKYWLYLVLWIL 568
           +L + QV++ I   W Y + W L
Sbjct: 156 KLSRGQVILFIVLIWTYTIPWAL 178


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 766 SSGXIVXRPPGXPPXPXGPXMVKXPXSS*HLLR 864
           S G     PPG PP      M+  P S  H ++
Sbjct: 43  SQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQ 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,061
Number of Sequences: 438
Number of extensions: 4558
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)