Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B09
         (938 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54TI7 Cluster: WH2 domain-containing protein; n=1; Dic...    36   1.5  
UniRef50_A0BLV2 Cluster: Chromosome undetermined scaffold_115, w...    33   7.9  
UniRef50_A3GHT1 Cluster: Predicted protein; n=3; Saccharomycetac...    27   7.9  
UniRef50_Q54SP2 Cluster: Actin-binding protein; n=2; Dictyosteli...    29   8.2  

>UniRef50_Q54TI7 Cluster: WH2 domain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: WH2 domain-containing
           protein - Dictyostelium discoideum AX4
          Length = 459

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 23/95 (24%), Positives = 27/95 (28%)
 Frame = +3

Query: 336 PPXGGGXGXPXXKKXPPXAXXXPPLXXGXKXPPSGANXXXXXXXXXXXXXXXQTRHSXPP 515
           PP  G  G P  +  PP     PP     + PP G+N                     P 
Sbjct: 339 PPPPGPNGGPMNRPPPPGPNGGPPQPMN-RPPPPGSNGGPPQPMSRPPPPGQPNMPPRPV 397

Query: 516 XXXXXXXXXXXXXXXXGXPPSPXQXXPPPPPXXXR 620
                           G PP P +  PPP P   R
Sbjct: 398 STINGVGGAPPTQPNGGPPPKPQRPGPPPVPGAPR 432


>UniRef50_A0BLV2 Cluster: Chromosome undetermined scaffold_115,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_115,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1084

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 544 PXGGXXXXXLPPPXKXXPPPPPXPXXSP 627
           P GG      PPP    PPPPP P  +P
Sbjct: 593 PPGGRLPPPPPPPPGGMPPPPPMPGRAP 620


>UniRef50_A3GHT1 Cluster: Predicted protein; n=3;
            Saccharomycetaceae|Rep: Predicted protein - Pichia
            stipitis (Yeast)
          Length = 1790

 Score = 27.5 bits (58), Expect(2) = 7.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 574  PPPXKXXPPPPPXP 615
            PPP    PPPPP P
Sbjct: 1108 PPPPPPPPPPPPLP 1121



 Score = 24.6 bits (51), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 595  PPPPPXPXXSPF 630
            PPPPP P   PF
Sbjct: 1154 PPPPPPPPPPPF 1165


>UniRef50_Q54SP2 Cluster: Actin-binding protein; n=2; Dictyostelium
           discoideum|Rep: Actin-binding protein - Dictyostelium
           discoideum AX4
          Length = 1126

 Score = 29.5 bits (63), Expect(2) = 8.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 550 GGXXXXXLPPPXKXXPPPPPXP 615
           GG      PPP    PPPPP P
Sbjct: 574 GGGPPPPPPPPSSGGPPPPPPP 595



 Score = 22.6 bits (46), Expect(2) = 8.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 385 PXRGXPPXSXXGKKXPPPXP 444
           P    PP S  G   PPP P
Sbjct: 550 PPPPAPPVSGGGPPPPPPPP 569


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,384,663
Number of Sequences: 1657284
Number of extensions: 5629520
Number of successful extensions: 82564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63247
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86141029997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)