Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B09
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.77 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   2.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect(2) = 0.77
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 535 FSXPXGGXXXXXLPPPXKXXPPPPPXP 615
           F  P        LP      PPPPP P
Sbjct: 171 FQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 0.77
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 595 PPPPPXPXXSP 627
           PPPPP P   P
Sbjct: 238 PPPPPPPTLPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 570 PPSPXQXXPPPPP 608
           PP+P    PPPPP
Sbjct: 753 PPAPIMGGPPPPP 765



 Score = 24.2 bits (50), Expect(2) = 2.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 574 PPPXKXXPPPPPXP 615
           P P    PPPPP P
Sbjct: 754 PAPIMGGPPPPPPP 767



 Score = 21.4 bits (43), Expect(2) = 2.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 595 PPPPPXPXXS 624
           PPPPP P  S
Sbjct: 777 PPPPPPPAVS 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,069
Number of Sequences: 5004
Number of extensions: 15238
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)