Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B08
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    86   5e-18
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   7.6  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   7.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 41/93 (44%), Positives = 52/93 (55%)
 Frame = +1

Query: 268 GFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVNVQ 447
           GFH+H+ GD + GC S G HFNPE K HG      RHVG LGN+  D     +    +  
Sbjct: 45  GFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSV 104

Query: 448 ISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
           ISL G++ IIGR +V H   DD G+    +S K
Sbjct: 105 ISLFGANSIIGRTIVIHAGEDDLGKGTSEESLK 137


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 128 HGFTTPSRAIAVLST 172
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 376 HVGXLGNVVFDENHYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDY 516
           ++G L N V    HY R   + +Q +L+ S GI+   +   +    Y
Sbjct: 397 NLGWLNNNV--AGHYKRATAIGIQQTLANSSGIVAGQIYRSKNAPKY 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,617
Number of Sequences: 5004
Number of extensions: 50940
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)