Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_B08
(838 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X02317-1|CAA26182.1| 154|Homo sapiens protein ( Human mRNA for ... 114 3e-25
L44139-1|AAB05661.1| 154|Homo sapiens Cu/Zn-superoxide dismutas... 114 3e-25
EF151142-1|ABL96616.1| 154|Homo sapiens superoxide dismutase 1 ... 114 3e-25
CR541742-1|CAG46542.1| 154|Homo sapiens SOD1 protein. 114 3e-25
CR450355-1|CAG29351.1| 154|Homo sapiens SOD1 protein. 114 3e-25
BT006676-1|AAP35322.1| 154|Homo sapiens superoxide dismutase 1,... 114 3e-25
BC001034-1|AAH01034.1| 154|Homo sapiens superoxide dismutase 1,... 114 3e-25
AY835629-1|AAV80422.1| 154|Homo sapiens superoxide dismutase 1,... 114 3e-25
AY450286-1|AAR21563.1| 154|Homo sapiens superoxide dismutase pr... 114 3e-25
AY049787-1|AAL15444.1| 154|Homo sapiens soluble superoxide dism... 114 3e-25
L44139-2|AAB05662.1| 154|Homo sapiens Cu/Zn-superoxide dismutas... 114 4e-25
CR541928-1|CAG46726.1| 274|Homo sapiens CCS protein. 91 6e-18
BC112055-1|AAI12056.1| 274|Homo sapiens copper chaperone for su... 91 6e-18
BC105016-1|AAI05017.1| 274|Homo sapiens copper chaperone for su... 91 6e-18
AY113179-1|AAM50090.1| 274|Homo sapiens superoxide dismutase co... 91 6e-18
AF002210-1|AAC51764.1| 274|Homo sapiens copper chaperone for su... 91 6e-18
U10116-1|AAA62278.1| 240|Homo sapiens superoxide dismutase prot... 63 1e-09
J02947-1|AAA66000.1| 240|Homo sapiens SOD3 protein. 63 1e-09
CR541853-1|CAG46651.1| 240|Homo sapiens SOD3 protein. 63 1e-09
BC014418-1|AAH14418.1| 240|Homo sapiens superoxide dismutase 3,... 63 1e-09
AY787834-1|AAV40827.1| 240|Homo sapiens superoxide dismutase 3,... 63 1e-09
X01783-1|CAA25918.1| 39|Homo sapiens protein ( Human superoxid... 40 0.011
X01781-1|CAA25916.1| 32|Homo sapiens protein ( Human superoxid... 31 3.9
>X02317-1|CAA26182.1| 154|Homo sapiens protein ( Human mRNA for
Cu/Zn superoxide dismutase (SOD). ).
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>L44139-1|AAB05661.1| 154|Homo sapiens Cu/Zn-superoxide dismutase
protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>EF151142-1|ABL96616.1| 154|Homo sapiens superoxide dismutase 1
protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>CR541742-1|CAG46542.1| 154|Homo sapiens SOD1 protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>CR450355-1|CAG29351.1| 154|Homo sapiens SOD1 protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>BT006676-1|AAP35322.1| 154|Homo sapiens superoxide dismutase 1,
soluble (amyotrophic lateral sclerosis 1 (adult))
protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>BC001034-1|AAH01034.1| 154|Homo sapiens superoxide dismutase 1,
soluble (amyotrophic lateral sclerosis 1 (adult))
protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>AY835629-1|AAV80422.1| 154|Homo sapiens superoxide dismutase 1,
soluble (amyotrophic lateral sclerosis 1 (adult))
protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>AY450286-1|AAR21563.1| 154|Homo sapiens superoxide dismutase
protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>AY049787-1|AAL15444.1| 154|Homo sapiens soluble superoxide
dismutase 1 protein.
Length = 154
Score = 114 bits (275), Expect = 3e-25
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>L44139-2|AAB05662.1| 154|Homo sapiens Cu/Zn-superoxide dismutase
protein.
Length = 154
Score = 114 bits (274), Expect = 4e-25
Identities = 53/104 (50%), Positives = 65/104 (62%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL G +GFHVHE GD + GC S G HFNP + HG P D RHVG LGNV D++
Sbjct: 34 GSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKD 93
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSKK 546
+ + + ISLSG H IIGR +V HEK DD G+ + +S K
Sbjct: 94 GVADVSIEGSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTK 137
>CR541928-1|CAG46726.1| 274|Homo sapiens CCS protein.
Length = 274
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/103 (42%), Positives = 61/103 (59%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL PG +G HVH+ GDL+ C S G+HFNP+ HG P D +RH G LGNV D +
Sbjct: 117 GTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADAD 176
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSK 543
+ + + Q+ + +IGR+++ E DD G+ HP SK
Sbjct: 177 GRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGGHPLSK 216
>BC112055-1|AAI12056.1| 274|Homo sapiens copper chaperone for
superoxide dismutase protein.
Length = 274
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/103 (42%), Positives = 61/103 (59%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL PG +G HVH+ GDL+ C S G+HFNP+ HG P D +RH G LGNV D +
Sbjct: 117 GTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADAD 176
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSK 543
+ + + Q+ + +IGR+++ E DD G+ HP SK
Sbjct: 177 GRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGGHPLSK 216
>BC105016-1|AAI05017.1| 274|Homo sapiens copper chaperone for
superoxide dismutase protein.
Length = 274
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/103 (42%), Positives = 61/103 (59%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL PG +G HVH+ GDL+ C S G+HFNP+ HG P D +RH G LGNV D +
Sbjct: 117 GTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADAD 176
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSK 543
+ + + Q+ + +IGR+++ E DD G+ HP SK
Sbjct: 177 GRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGGHPLSK 216
>AY113179-1|AAM50090.1| 274|Homo sapiens superoxide dismutase
copper chaperone protein.
Length = 274
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/103 (42%), Positives = 61/103 (59%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL PG +G HVH+ GDL+ C S G+HFNP+ HG P D +RH G LGNV D +
Sbjct: 117 GTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADAD 176
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSK 543
+ + + Q+ + +IGR+++ E DD G+ HP SK
Sbjct: 177 GRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGGHPLSK 216
>AF002210-1|AAC51764.1| 274|Homo sapiens copper chaperone for
superoxide dismutase protein.
Length = 274
Score = 90.6 bits (215), Expect = 6e-18
Identities = 44/103 (42%), Positives = 61/103 (59%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDEN 414
G I GL PG +G HVH+ GDL+ C S G+HFNP+ HG P D +RH G LGNV D +
Sbjct: 117 GTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADAD 176
Query: 415 HYSRIXLVNVQISLSGSHGIIGRAVVXHEKTDDYGQSDHPDSK 543
+ + + Q+ + +IGR+++ E DD G+ HP SK
Sbjct: 177 GRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRGGHPLSK 216
>U10116-1|AAA62278.1| 240|Homo sapiens superoxide dismutase
protein.
Length = 240
Score = 63.3 bits (147), Expect = 1e-09
Identities = 36/89 (40%), Positives = 45/89 (50%)
Frame = +1
Query: 274 HVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVNVQIS 453
HVH+ GDLS GC STG H+NP H +H G GN + R + S
Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNFAVRDGSLWRYR-AGLAAS 166
Query: 454 LSGSHGIIGRAVVXHEKTDDYGQSDHPDS 540
L+G H I+GRAVV H DD G+ + S
Sbjct: 167 LAGPHSIVGRAVVVHAGEDDLGRGGNQAS 195
>J02947-1|AAA66000.1| 240|Homo sapiens SOD3 protein.
Length = 240
Score = 63.3 bits (147), Expect = 1e-09
Identities = 36/89 (40%), Positives = 45/89 (50%)
Frame = +1
Query: 274 HVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVNVQIS 453
HVH+ GDLS GC STG H+NP H +H G GN + R + S
Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNFAVRDGSLWRYR-AGLAAS 166
Query: 454 LSGSHGIIGRAVVXHEKTDDYGQSDHPDS 540
L+G H I+GRAVV H DD G+ + S
Sbjct: 167 LAGPHSIVGRAVVVHAGEDDLGRGGNQAS 195
>CR541853-1|CAG46651.1| 240|Homo sapiens SOD3 protein.
Length = 240
Score = 63.3 bits (147), Expect = 1e-09
Identities = 36/89 (40%), Positives = 45/89 (50%)
Frame = +1
Query: 274 HVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVNVQIS 453
HVH+ GDLS GC STG H+NP H +H G GN + R + S
Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNFAVRDGSLWRYR-AGLAAS 166
Query: 454 LSGSHGIIGRAVVXHEKTDDYGQSDHPDS 540
L+G H I+GRAVV H DD G+ + S
Sbjct: 167 LAGPHSIVGRAVVVHAGEDDLGRGGNQAS 195
>BC014418-1|AAH14418.1| 240|Homo sapiens superoxide dismutase 3,
extracellular protein.
Length = 240
Score = 63.3 bits (147), Expect = 1e-09
Identities = 36/89 (40%), Positives = 45/89 (50%)
Frame = +1
Query: 274 HVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVNVQIS 453
HVH+ GDLS GC STG H+NP H +H G GN + R + S
Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNFAVRDGSLWRYR-AGLAAS 166
Query: 454 LSGSHGIIGRAVVXHEKTDDYGQSDHPDS 540
L+G H I+GRAVV H DD G+ + S
Sbjct: 167 LAGPHSIVGRAVVVHAGEDDLGRGGNQAS 195
>AY787834-1|AAV40827.1| 240|Homo sapiens superoxide dismutase 3,
extracellular protein.
Length = 240
Score = 63.3 bits (147), Expect = 1e-09
Identities = 36/89 (40%), Positives = 45/89 (50%)
Frame = +1
Query: 274 HVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGXLGNVVFDENHYSRIXLVNVQIS 453
HVH+ GDLS GC STG H+NP H +H G GN + R + S
Sbjct: 114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNFAVRDGSLWRYR-AGLAAS 166
Query: 454 LSGSHGIIGRAVVXHEKTDDYGQSDHPDS 540
L+G H I+GRAVV H DD G+ + S
Sbjct: 167 LAGPHSIVGRAVVVHAGEDDLGRGGNQAS 195
>X01783-1|CAA25918.1| 39|Homo sapiens protein ( Human superoxide
dismutase (SOD-1) gene exon 4. ).
Length = 39
Score = 39.9 bits (89), Expect = 0.011
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 376 HVGXLGNVVFDENHYSRIXLVNVQISLSGSHGIIGRAVV 492
HVG LGNV D++ + + + + ISLSG H IIGR +V
Sbjct: 1 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLV 39
>X01781-1|CAA25916.1| 32|Homo sapiens protein ( Human superoxide
dismutase (SOD-1) gene exon 2. ).
Length = 32
Score = 31.5 bits (68), Expect = 3.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 235 GGITGLPPGEYGFHVHEKGD 294
G I GL G +GFHVHE GD
Sbjct: 10 GSIKGLTEGLHGFHVHEFGD 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,516,415
Number of Sequences: 237096
Number of extensions: 2565735
Number of successful extensions: 14463
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12320
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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