Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_B07
(1334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.039
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.16
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.21
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.36
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.83
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 5.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.9
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect(2) = 0.039
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 357 PPXXXXPXXSTXXSXXPPPXPPPLP 283
PP P S PPP PPP P
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 25.0 bits (52), Expect(2) = 0.039
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -3
Query: 309 PPPXPPPLPXXPXSPXXPXXLPXP 238
P P PPP P P LP P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP 259
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 309 PPPXPPPLPXXPXSPXXPXXLPXPPPXPXXXXXXP 205
PPP P +P P +P P P PP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 31.5 bits (68), Expect = 0.27
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 357 PPXXXXPXXSTXXSXXPPPXPPPLPXXPXSPXXPXXLPXPPPXP 226
P P S PP PP P P P P P PPP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-PPPLP 1736
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 318 SXXPPPXPPPLPX-XPXSPXXPXXLPXPPPXP 226
S PPP PP+P P +P P P P
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -3
Query: 309 PPPXP--PPLPXX-PXSPXXPXXLPXPPPXPXXXXXXPXXAL 193
PP P PPLP P +P P P PPP P P ++
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -3
Query: 306 PPXPPPLPXXPXSPXXPXXLPXPPPXPXXXXXXP 205
P PP P P +P P +P PP P P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/63 (30%), Positives = 19/63 (30%)
Frame = -3
Query: 357 PPXXXXPXXSTXXSXXPPPXPPPLPXXPXSPXXPXXLPXPPPXPXXXXXXPXXALXXXSX 178
PP P T S PP PP P P S PP P AL
Sbjct: 253 PPPIPPPSNGTVSS---PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK 309
Query: 177 XPP 169
PP
Sbjct: 310 RPP 312
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Frame = -3
Query: 357 PPXXXXPXXSTXXSXXPPPXPPPLPXX-PXS--PXXPXXLPXPPPXPXXXXXXP 205
PP ST PP PP P P S P P P PP P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -3
Query: 330 STXXSXXPPPXPPPLPXXPXSPXXPXXLPXPPPXP 226
S+ S PPP PP P P PPP P
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = -3
Query: 327 TXXSXXPPPXPPPLP-XXPXSPXXPXXLPXPPPXP 226
T S PP PP +P P P PPP P
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIP 257
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.36
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -3
Query: 309 PPPXPPPLPXXP-XSPXXPXXLPXPPPXPXXXXXXPXXALXXXSXXPP 169
PPP P P P +P P LP PP P P A S PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLP-PPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Frame = -3
Query: 318 SXXPPPXP-PPLPXXPXSPXX--PXXLPXPPPXPXXXXXXPXXALXXXSXXPP 169
S PP P PP P P P PPP P P A S PP
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = -3
Query: 357 PPXXXXPXXSTXXSXXPPPXP----PPLPXXPXSPXXPXXLPXPPPXP 226
PP P + PPP P PP P P P PPP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 306 PPXPPPLPXXPXSPXXPXXLPXPPPXPXXXXXXP 205
PP PPP P +P P +P PPP P P
Sbjct: 732 PPPPPPAVIVP-TP-APAPIPVPPPAPIMGGPPP 763
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Frame = -3
Query: 357 PPXXXXPXXSTXXSXXPPPXPPPLPXXPXSPXXPXXL----PXPPPXP 226
PP + + P P P P+ P P P + P PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 309 PPPXPPPLPXXPXSPXXPXXLPXPPPXP 226
PP PPP P P P P PPP P
Sbjct: 5 PPGNPPPPPPPPG--FEPPSQPPPPPPP 30
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 233 GGGXGXXXGXXGXQGXXGRGGGXGGG 310
GGG G G +G G GG GGG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGG 471
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 227 GXGGGXGXXXGXXGXQGXXGRGGGXGG 307
G GG G G G GRGG GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGG 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,478
Number of Sequences: 5004
Number of extensions: 7696
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 733268682
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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