Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B06
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.49 
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   2.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.0  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.0  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 168 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRQADFVPVD 311
           P   L+A Q+++D    S++    I   + ++   YVQ+++ DF PVD
Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 647 SPDPKTNSAWKAQYNKLCSMCEHPERCDYPDRNQR 751
           +PDPKT S    +YN  C   +HPE   +   N +
Sbjct: 90  TPDPKTESPSFVKYNAHCD--DHPEISGHVSSNDK 122


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 331 PPKYPIRTLSFSRSTEPMKN 390
           PPK P+R +S  RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 292 PISFQSTRKTCTWPPKYPIRTLSFSRSTEPMKN 390
           P+  Q   +   +PP YPI  +S+   T P  N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = +3

Query: 294 DFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVIHKDLPIDNLDQLKGL 473
           D  P+D +    +  + N   V+     TDE    P   E  + +   + +D+ D + G+
Sbjct: 100 DLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLLEEGEVAVSSPILLDSKDVIMGV 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,840,567
Number of Sequences: 5004
Number of extensions: 85215
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)