Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_B06
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737... 31 0.90
12_01_0779 + 7129879-7130398,7130585-7130664 31 1.2
11_03_0097 + 9967351-9967969,9968180-9968259 31 1.2
02_01_0120 + 884467-887649 31 1.6
08_02_1238 + 25486263-25487574,25488210-25489117 29 4.8
02_01_0247 - 1632425-1632646,1632873-1632958,1633209-1633332,163... 29 6.4
12_01_0062 + 530180-532398,533123-533213,533398-533613 28 8.4
11_01_0060 + 453615-454030,454086-455862 28 8.4
03_05_0605 - 26066394-26066776,26067466-26067497,26069075-260693... 28 8.4
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 8.4
>01_06_1674 +
39072861-39073260,39073288-39073358,39073659-39073716,
39074604-39074659,39075179-39075400
Length = 268
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 44 LSSDHLTELVGCLDNGFKIFHFDNPDLC 127
L+ + L EL GCLD GF + + P+LC
Sbjct: 63 LTEEDLEELKGCLDLGFGFAYHEIPELC 90
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 44 LSSDHLTELVGCLDNGFKIFHFDNPDLC 127
L+ D L EL GC+D GF + + P+LC
Sbjct: 99 LTDDDLEELKGCVDLGFGFSYDEIPELC 126
>11_03_0097 + 9967351-9967969,9968180-9968259
Length = 232
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 44 LSSDHLTELVGCLDNGFKIFHFDNPDLC 127
L+ D L EL GC+D GF + + P+LC
Sbjct: 131 LTDDDLEELKGCVDLGFGFSYDEIPELC 158
>02_01_0120 + 884467-887649
Length = 1060
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 663 QTRLGRPNTTSYALCANIQRDATIPTEISGYXGXIEV 773
+T G PN TS L N +PT+I+G+ G IEV
Sbjct: 416 RTLQGLPNLTSLVLTKNFHGGEAMPTDIAGFAG-IEV 451
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 803 LPPKSYSPGKFFRNCPSVPS 862
LP KSYS G F+R+ PSV S
Sbjct: 27 LPVKSYSYGSFYRDDPSVSS 46
>02_01_0247 -
1632425-1632646,1632873-1632958,1633209-1633332,
1633622-1633729,1634297-1634378,1634718-1634770,
1634866-1634949,1635092-1635249,1635326-1635805,
1636340-1636709
Length = 588
Score = 28.7 bits (61), Expect = 6.4
Identities = 27/100 (27%), Positives = 43/100 (43%)
Frame = +3
Query: 501 NVGYKIPLTMLMKRAVFPKMNXHSISPKENELRALVDVLHEILAS*VNGLRIRKQTRLGR 680
+VGY+ PL MLM+R H+ + E AL E A GL + +
Sbjct: 422 HVGYEDPLLMLMRR-----RTVHAGLVVKGEEGALSMTTKERSAHASKGLPVNHCSGFRI 476
Query: 681 PNTTSYALCANIQRDATIPTEISGYXGXIEVSGSPTTDKS 800
PN+T ++ I R+ ++ E + +P TD+S
Sbjct: 477 PNSTDFSETDGISREG-FSVIVNAQELGFESTETPRTDRS 515
>12_01_0062 + 530180-532398,533123-533213,533398-533613
Length = 841
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 102 FILITLICACVNAAKITYKICVPSQHLK 185
FIL T++ AC NAA I + C+ S LK
Sbjct: 500 FILATVLNACANAALIRHCRCIHSLVLK 527
>11_01_0060 + 453615-454030,454086-455862
Length = 730
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 102 FILITLICACVNAAKITYKICVPSQHLK 185
FIL T++ AC NAA I + C+ S LK
Sbjct: 484 FILATVLNACANAALIRHCRCIHSLVLK 511
>03_05_0605 -
26066394-26066776,26067466-26067497,26069075-26069300,
26069422-26069613,26070069-26070828,26071044-26071583
Length = 710
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 261 ECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDA----PFRYEAVIVI 428
E LN QR A+ + ++ Y+ ++P+ + +E+R +EP + P + V I
Sbjct: 209 ELLNQCIQRVANS---NLDNRYLEKRLPDDLYAKLKEFRVPDEPHSGILDPEHEKRVRNI 265
Query: 429 HKDLPIDNLD 458
HK L D++D
Sbjct: 266 HKALDSDDVD 275
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 560 HFWE-NCTLHQHC*RDLVSHVSV-NSSMTRLQAFQLVQ 453
H W+ NC+L D++S V NS+ RL +F LVQ
Sbjct: 247 HKWKSNCSLDSSVCIDIISESEVVNSARRRLDSFDLVQ 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,447,752
Number of Sequences: 37544
Number of extensions: 579493
Number of successful extensions: 1320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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