Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B05
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339           31   0.89 
07_03_0946 - 22798055-22798742,22799746-22799810                       30   2.1  
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     29   6.3  
03_05_0757 + 27478425-27479016,27479202-27479277,27479366-274794...    29   6.3  

>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
          Length = 503

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 427 IDIDRRFRLCTRSAWLGPQSARSHYSRPRWW*TSSCPNYI 308
           ID+D     C R    GP+  RS+ S PR W   +CP  I
Sbjct: 464 IDLDLDHSNCLRHRSGGPELNRSNKSPPRIWLRQACPRKI 503


>07_03_0946 - 22798055-22798742,22799746-22799810
          Length = 250

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 415 RRFRLCTRSAWLGPQSARSHYSRPRWW*-TSSCPNYILPLRS 293
           RR  +  R++ L   S     S+PRWW  T +C  Y+LPL +
Sbjct: 71  RRLEVGCRASSLASFSYPELTSKPRWWWRTVACVPYLLPLHN 112


>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 299 QRQDIIWTRRSLPPSRA*IMAS---RRLWTQPRRPCT*AEATVYIDTT 433
           +R   + +RR L P RA  + S   R  W+  RRP T + ATV  D T
Sbjct: 35  ERYSRVPSRRLLQPQRAFNLISIYKRSSWSSARRPRTLSAATVGTDVT 82


>03_05_0757 +
           27478425-27479016,27479202-27479277,27479366-27479481,
           27481043-27481608
          Length = 449

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 448 LFWYPXRIDIDRRFRLCTRSAWL 380
           LFW P R  +   F+L T SAW+
Sbjct: 244 LFWIPERRSLPTAFKLFTGSAWM 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,393,143
Number of Sequences: 37544
Number of extensions: 419996
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)