Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B03
         (1119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    37   0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.006
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.29 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   6.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 438 PPPPKQXXAX-----PRGXGXPPPPPXRXLASXXXXPPP 539
           PPPP+   A      P+G   PPPPP R   S    PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXPPP 551
           P PP    A P   G P  PP   L      PPP P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPP---LPPAAPAPPPAPAP 482



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXPPP 551
           PPPP       RG      PP    +S    PPP PPP
Sbjct: 311 PPPPPPPSRRNRGK-----PPIGNGSSNSSLPPPPPPP 343



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXP 545
           PPPP    A   G   PP    R +++    PP  P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
 Frame = +3

Query: 438 PPPP--KQXXAXPRGXGX------PPPPPXRXLASXXXXPPP----XPPP 551
           PPPP  +     P G G       PPPPP R  A+     PP     PPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXPPP 551
           P P       P   G PPPPP   +A     PPP PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXPPP 551
           PPPP      P     P PPP    A     PPP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPP----APIMGGPPPPPPP 767



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 413 PPPXXXXXPPXPQTXKXXAAGXGXPPPPP 499
           PPP      P P       AG G PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.51
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 413 PPPXXXXXPPXPQTXKXXAAGXGXPPPPPXA 505
           P P     PP P       AG   PPPPP A
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 29.5 bits (63), Expect = 0.89
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 919 PPPPPXTPXXXPPPXPXP 972
           PPPPP      PPP P P
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = +1

Query: 919  PPPPPXT--PXXXPPPXPXPXXRRXXRXPPP 1005
            PPPPP    P   P P P P        PPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 919  PPPPPXTPXXXPPPXPXPXXRRXXRXPPP 1005
            P PPP      PPP P P        PPP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXP 545
           PPPP        G   PPPPP    A       P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 922  PPPPXTPXXXPPPXPXPXXRRXXRXPPP 1005
            PPP       PPP P P        PPP
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 480 GXPPPPPXRXLASXXXXPPPXPPP 551
           G PPPPP          PPP PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 919 PPPPPXTPXXXPPPXPXP 972
           PPPPP  P   PP  P P
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 919  PPPPPXTPXXXPPPXPXPXXRRXXRXPPP 1005
            PPPP   P   PPP P P   +  +   P
Sbjct: 13   PPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPP 500
           PPPP      P     PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 413  PPPXXXXXPPXPQTXKXXAAGXGXPPPP 496
            PPP     PP P      A     PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +3

Query: 438  PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPP-PXPPP 551
            PP   Q  A P+     PPPP   +      PP P  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 919  PPPPPXTPXXXPPPXPXPXXRRXXRXPPP 1005
            P PPP      PPP   P        PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +3

Query: 438 PPPPKQXXAXPRGXGXPPPPPXRXLASXXXXPPPXPPP 551
           PPPP            P   P    A+    PPP P P
Sbjct: 366 PPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAP 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,278
Number of Sequences: 5004
Number of extensions: 15924
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 593670236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)