Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_B01
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.15 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   0.60 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   2.4  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   3.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.7  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 279 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 172
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 216 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKXYSAGEFKIPIQYRSTRTLRMIXN 40
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I N
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -3

Query: 214 EELPPGLGSSADRAESQHQREDEAQNTYKIHFTEIX*CRRIQNSNTISFDANAKNDXKS* 35
           +++PP   S+A        R   +Q+T  +   E+    RIQN +  + D    ND  + 
Sbjct: 118 KDMPPMKSSAAVTERPSMHRSAPSQDTLDLKKQELFAGARIQNDDESTTDTIPHNDDGTE 177

Query: 34  GIPYTE 17
           G  Y E
Sbjct: 178 GDEYGE 183


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 396 LNSXKLEIHNYLQSXFKLNASLEFNDKVY 310
           L    LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 694 PXSPPXXXGXXXPPPPXXXXXXXXXXPPPXXXXXXXPPPP 813
           P  PP       PPPP          PPP       PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP------PPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/37 (29%), Positives = 12/37 (32%)
 Frame = +1

Query: 700  SPPXXXGXXXPPPPXXXXXXXXXXPPPXXXXXXXPPP 810
            +PP       PPPP          P P       PPP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,322
Number of Sequences: 5004
Number of extensions: 33065
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)