Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A22
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        29   5.7  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    29   5.7  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   7.6  
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    28   7.6  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    28   7.6  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   7.6  

>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 377 DKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQGQS 493
           D+M DEAI LF        FE +YK     R+ L +  S
Sbjct: 464 DQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLERSAS 502


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 377 DKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQGQS 493
           D+M DEAI LF        FE +YK     R+ L +  S
Sbjct: 501 DQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLERSAS 539


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 68   EXMKSVLILAGLVARRAQQCSTKAEHIKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 244
            E  +  L +  L+    Q+  +K    ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2250 EGERMALRIKRLLDPELQKFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 68   EXMKSVLILAGLVARRAQQCSTKAEHIKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 244
            E  +  L +  L+    Q+  +K    ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2250 EGERMALRIKRLLDPELQKFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +3

Query: 393 KLLLYSIYSITLRTLKRSTRLPVLRVCISIKVNLVC-PPTSLLSSALI-----ATVSWFL 554
           K +++++Y+I  R       L    VCI I   ++C  PTS ++S  I       + WF 
Sbjct: 215 KRMVHNVYNINSRYKSYENYLATKSVCIVIFSQILCVGPTSSITSVFIRFRDSIPLEWFH 274

Query: 555 LRMKY 569
           L + Y
Sbjct: 275 LIISY 279


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 182 FQQIRHPHFLSLCARLWYCTAE 117
           F+Q  HP  + LC R+W  T+E
Sbjct: 922 FRQTPHPFNIDLCRRIWNLTSE 943


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 68   EXMKSVLILAGLVARRAQQCSTKAEHIKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 244
            E  +  L +  L+    Q+  +K    ++K+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2250 EGERMALRIKRLLDPELQKFRSKNFVSRSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,137
Number of Sequences: 27780
Number of extensions: 331930
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)