Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_A21
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.68
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 1.6
05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370... 31 1.6
03_04_0113 + 17382370-17382714 31 1.6
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 29 3.6
08_01_0925 + 9117217-9117576,9117674-9117749,9118460-9118592,911... 29 4.8
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 6.3
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 28 8.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.4
03_06_0386 + 33555682-33556344,33557138-33557299 28 8.4
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 0.68
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 616 PFPPGSSPRAALLVPEPWPLTGIPGPPFSPSGK 714
P PP +P+ VP P PL G G P PS K
Sbjct: 765 PPPPPQAPKPPGTVPPPPPLHGASGRPHPPSSK 797
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +1
Query: 616 PFPPGSSPRAALLVPEPWPLTGIPGPPFSPS 708
P P S P L P P P T P PP SPS
Sbjct: 1148 PLPSDSPPCQPPLPPSPPPATPPPPPPLSPS 1178
>05_01_0466 +
3702771-3703016,3703133-3703196,3703757-3704055,
3704666-3704881,3705216-3705422,3705697-3705789,
3706098-3706196,3706300-3706329,3706885-3706938,
3707533-3707586,3707658-3707735,3707927-3708018,
3708093-3708150,3708248-3708322,3708930-3708977,
3709131-3709228,3709446-3709521,3709659-3709721,
3709810-3709901,3710207-3710275,3710410-3710473,
3710545-3710610,3710700-3710777
Length = 772
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -3
Query: 677 VSGQGSGTRXAARGELPGGNGXVSL*SWSGFATSDLSVDFCDARQGGGAYGKTPATRPFY 498
V G +G G+ GG G + SW G A +S+ +AR G + P
Sbjct: 15 VGGGAAGLGGGEAGDGGGGVGGAASRSWHGGAQLYVSLKMENARITGDLVPHVYGSEPII 74
Query: 497 GSW 489
GSW
Sbjct: 75 GSW 77
>03_04_0113 + 17382370-17382714
Length = 114
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 577 EVAXPDQDYKDTXPFPPGSSPRAALLVPEPWPLTGIPGPPFS 702
EVA P D P GS+ + L+P P PL P PFS
Sbjct: 24 EVADPATDVAAATPSGGGSTAAKSPLLPPPLPLPSPPPLPFS 65
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 616 PFPPGSSPRAALLVPEPWPLTGIPGPPF-SPSGKRXAFLIPXXVRISLXGVGRSAXXLGL 792
P PP P + VP P P G+P PP + + + +P + + G A L L
Sbjct: 47 PQPP-PPPYQVMPVPPPPPPVGLPVPPLPATMAPQPGYCVPAAATV-VDGPASRAVVLSL 104
Query: 793 CAPNPP 810
P+ P
Sbjct: 105 VPPHAP 110
>08_01_0925 +
9117217-9117576,9117674-9117749,9118460-9118592,
9118684-9118795,9119121-9119180,9119425-9119516,
9119628-9119697,9119776-9119880
Length = 335
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 622 PPGSSPRAALLVPEPWPLTGIPGPP 696
P +P A VP P P+ G+PG P
Sbjct: 14 PAAGAPAPAAAVPPPPPVPGVPGAP 38
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 589 PDQDYKDTXPFPPGSSPR--AALLVPEPWPLTGIPGPPFSPS 708
PDQ P PPG +P AL VP P P T P P+
Sbjct: 42 PDQSSSPPTPAPPGPAPPFFPALPVPPPPPATAGQEQPTYPA 83
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 697 FSPSGKRXAFLIPXXVRISLXGVGRSAXXLGLCAPNPPLQARTACPLYPGNYSP 858
F+ S + + +P +R G+ A GLC PPL A + P P SP
Sbjct: 269 FNASNNQLSGRVPDAMRAKF-GLASFAGNAGLCGLAPPLPACSFMPREPAPTSP 321
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 708 RRGERXTRYSGKRPGFGNQEXGTRGASRGKRXG 610
R GER G GFG G RG RG R G
Sbjct: 4 RGGERGGERGGFGRGFGRGGRGDRGGRRGGRRG 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,390,120
Number of Sequences: 37544
Number of extensions: 502818
Number of successful extensions: 1761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -