Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A20
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = +3

Query: 819 PPPPPGPXGXXPLXGGPPPXLXCPPXXPPP--PP 914
           P P P      P  G PP     PP   PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 458 TPKXXPPXPXPPXPPXPXKXPGGXGXP 538
           +P   P  P    PP P + P   G P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 473 PPXPXPPXPPXPXKXP 520
           PP P PP PP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 801 PXXXXPPPPPPGPXG 845
           P    PPPPPP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 817  PPPPPPXP 840
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 816  PPPPPPGP 839
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 278  CILRGPSPRPTLLQA 322
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 816  PPPPPPGPXG 845
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 199 LTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLS 333
           +TT  T+     TTT   T  N +     T   P+ D      LS
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELS 702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,530
Number of Sequences: 438
Number of extensions: 6558
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)