Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A19
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.80 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.8  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   2.4  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   4.3  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   7.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.9  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 220 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 363
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 303
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +1

Query: 592 TVPEAX*HXRFX**PYHLPXIXPLTPSNTPWYLXPXMYQNXXXVPSXYNPTIPT 753
           TVP+A  H      P  LP   PLTPSN  W +     +N    P   N + PT
Sbjct: 251 TVPDASRHPY----PDRLPT--PLTPSNAHWVVHNEGNRNRRERPCRSNGSSPT 298


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = -2

Query: 281 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 120
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 119 TKANKVSLILAQWLSFESESTN 54
            + N VSLI + +L  E E +N
Sbjct: 344 FQENVVSLI-SGFLLKEYEKSN 364


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -2

Query: 323 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 144
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 143 EASAHTARTKA 111
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 474  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 358
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -2

Query: 269 SPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLIL 90
           S   SF  ++   +++ +S   T  Y  + S    +     L+ + ++  T A+ V  I 
Sbjct: 296 SQILSFHNNKGPVLSLKWSGTDT--YLAAGSADGTITLFDQLKQTQYSIDTLASSVLDI- 352

Query: 89  AQWLSFESESTNDVE 45
            +W+SF+   T+DVE
Sbjct: 353 -EWISFDEFVTSDVE 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,562
Number of Sequences: 5004
Number of extensions: 52257
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)