Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A17
         (1013 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   6.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   7.4  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   7.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 923 NXPPXHXXPXXXXXXXPPPPPP 988
           N PP    P       PPPPPP
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 929  PPXHXXPXXXXXXXPPPPPPXSXXPPXP 1012
            PP    P        PP PP S  PP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
 Frame = +2

Query: 971  PPPPPP--XSXXPPXP 1012
            PPPPPP      PP P
Sbjct: 763  PPPPPPGVAGAGPPPP 778



 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 932 PXHXXPXXXXXXXPPPPPP 988
           P    P       PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP 766


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 95  IIFFVCVFSTQMASAVIRFCALLLVGRSLFRRCLGTPPLVTXV 223
           +IF+ CV     A  ++RF A L   R  FRR      +V  V
Sbjct: 549 LIFYACVDFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAV 591


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 89  NIIIFFVCVFSTQMASAVIRFCALLLVGRSL 181
           N+I+FFV +++ Q+ S V+ +  + L  RSL
Sbjct: 369 NLIVFFVELYNFQLVSCVLVYDLIRLFLRSL 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,448
Number of Sequences: 5004
Number of extensions: 53826
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)