Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A16
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.7  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   2.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.2  
07_01_0479 + 3606663-3607448                                           29   6.8  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/53 (33%), Positives = 19/53 (35%)
 Frame = -3

Query: 904 PPXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFK 746
           PP       P  P    GPG    P + G    GPP    P  PR  G   FK
Sbjct: 354 PPAAPAAPRPPGP----GPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFK 402


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 26/87 (29%), Positives = 28/87 (32%)
 Frame = +2

Query: 635  GLFGTHXXXP*XSLPPXIGFHSMXPRSXGRVGPVFSXLKSXXPTPPGEKGGLXXWGPPXX 814
            G  G H   P   LP  IG     P   G  GP         P P G +GG     PP  
Sbjct: 1128 GGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGP------PAPPPPAGFRGGTP---PPNA 1178

Query: 815  XXXAXWTPXXPRXFSGLXANGVPPSXP 895
                   P  PR   G+     PP  P
Sbjct: 1179 HGGVAPPPPPPRGHGGVGGPPTPPGAP 1205



 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/47 (40%), Positives = 19/47 (40%)
 Frame = +3

Query: 762  PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXG 902
            PPPRG  GV   GGP         PP  P P    G  G  PP   G
Sbjct: 1187 PPPRGHGGV---GGPPT-------PPGAPAPPMPPGVPGGPPPPPGG 1223


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +3

Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
           PPP+G        GP    PP  GP   P P       G  PP   GG
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPP-KGPSPPPPPPPGGKKGGPPPPPPKGG 385


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/65 (30%), Positives = 22/65 (33%)
 Frame = -3

Query: 904 PPXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXN 725
           PP   GG  P      +GP   G P        GPP    P  P       F+       
Sbjct: 194 PPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMP----PPPFR--PGMPP 247

Query: 724 PPPGP 710
           PPPGP
Sbjct: 248 PPPGP 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,153
Number of Sequences: 37544
Number of extensions: 316885
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)