Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_A16
(918 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoi... 37 0.089
M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein. 37 0.089
AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alph... 35 0.48
AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph... 35 0.48
M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collage... 33 1.1
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 33 1.9
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 33 1.9
X07517-1|CAA30395.2| 236|Homo sapiens salivary proline-rich pro... 33 1.9
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 33 1.9
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 33 1.9
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 33 1.9
S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein. 32 2.5
K03208-1|AAA60189.1| 251|Homo sapiens PRB2 protein. 32 2.5
K02575-1|AAA36502.1| 173|Homo sapiens protein ( Human salivary ... 32 2.5
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 32 3.4
BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, ty... 32 3.4
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 32 3.4
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 32 3.4
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 32 3.4
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 32 3.4
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 32 3.4
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 32 3.4
X07516-1|CAA30394.2| 297|Homo sapiens salivary proline-rich pro... 31 4.4
S62928-1|AAB27288.2| 297|Homo sapiens PRB1M protein precursor p... 31 4.4
S52986-1|AAA13341.2| 331|Homo sapiens basic salivary proline-ri... 31 4.4
M97220-1|AAB05816.1| 331|Homo sapiens salivary proline-rich pro... 31 4.4
K03204-1|AAA60185.1| 331|Homo sapiens PRB1 protein. 31 4.4
BC044827-1|AAH44827.1| 338|Homo sapiens PRB2 protein protein. 31 4.4
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 31 5.9
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.9
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.9
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.9
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.9
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.9
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 31 5.9
S62941-1|AAB27289.1| 358|Homo sapiens Ps 2 protein. 31 7.7
M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collag... 31 7.7
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 31 7.7
BC008760-1|AAH08760.3| 591|Homo sapiens COL5A1 protein protein. 31 7.7
AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1... 31 7.7
AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1... 31 7.7
AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1... 31 7.7
AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V coll... 31 7.7
>U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoid
antigen 2/type XVII collagen protein.
Length = 1497
Score = 37.1 bits (82), Expect = 0.089
Identities = 29/74 (39%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Frame = +3
Query: 711 GPGG--GLXXFFXXLNXXXPP----PRGKRGVXXXGGPXXXXPP---LXGPPXXPGPFXX 863
GP G GL LN PP PRG G G P PP L GPP PG F
Sbjct: 839 GPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLS 898
Query: 864 XGXTG-FXPPXXXG 902
T F PP G
Sbjct: 899 NSETFLFGPPGPPG 912
>M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.
Length = 1532
Score = 37.1 bits (82), Expect = 0.089
Identities = 29/74 (39%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Frame = +3
Query: 711 GPGG--GLXXFFXXLNXXXPP----PRGKRGVXXXGGPXXXXPP---LXGPPXXPGPFXX 863
GP G GL LN PP PRG G G P PP L GPP PG F
Sbjct: 874 GPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLS 933
Query: 864 XGXTG-FXPPXXXG 902
T F PP G
Sbjct: 934 NSETFLFGPPGPPG 947
>AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alpha 1
protein.
Length = 1497
Score = 34.7 bits (76), Expect = 0.48
Identities = 28/74 (37%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Frame = +3
Query: 711 GPGG--GLXXFFXXLNXXXPP----PRGKRGVXXXGGPXXXXPP---LXGPPXXPGPFXX 863
GP G GL LN PP PRG G G P PP L GPP PG F
Sbjct: 839 GPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLS 898
Query: 864 XGXTGF-XPPXXXG 902
T PP G
Sbjct: 899 NSETFLSGPPGPPG 912
>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
protein.
Length = 1415
Score = 34.7 bits (76), Expect = 0.48
Identities = 28/74 (37%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Frame = +3
Query: 711 GPGG--GLXXFFXXLNXXXPP----PRGKRGVXXXGGPXXXXPP---LXGPPXXPGPFXX 863
GP G GL LN PP PRG G G P PP L GPP PG F
Sbjct: 839 GPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLS 898
Query: 864 XGXTGF-XPPXXXG 902
T PP G
Sbjct: 899 NSETFLSGPPGPPG 912
>M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collagen
protein.
Length = 635
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPP-LXGPPXXPGPFXXXGXTGFXPP 890
PRG GV G P PP L GPP PG F G G P
Sbjct: 440 PRGPPGVP--GSPGITGPPGLPGPPGAPGAFDETGIAGLHLP 479
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 765 PPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPP 890
PP V G P PP GPP PGPF PP
Sbjct: 293 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 334
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 765 PPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPP 890
PP V G P PP GPP PGPF PP
Sbjct: 293 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 334
>X07517-1|CAA30395.2| 236|Homo sapiens salivary proline-rich
protein protein.
Length = 236
Score = 32.7 bits (71), Expect = 1.9
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 127 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 185
Query: 721 PPGP 710
P GP
Sbjct: 186 PQGP 189
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 765 PPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPP 890
PP V G P PP GPP PGPF PP
Sbjct: 220 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 261
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 765 PPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPP 890
PP V G P PP GPP PGPF PP
Sbjct: 330 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 371
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 32.7 bits (71), Expect = 1.9
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 765 PPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPP 890
PP V G P PP GPP PGPF PP
Sbjct: 293 PPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPP 334
>S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein.
Length = 382
Score = 32.3 bits (70), Expect = 2.5
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 87 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK 145
Query: 721 PPGP 710
P GP
Sbjct: 146 PQGP 149
Score = 32.3 bits (70), Expect = 2.5
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 211 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKSQGPPPPGKPQGPPPQGGSKSRSSRSPPGK 269
Query: 721 PPGP 710
P GP
Sbjct: 270 PQGP 273
Score = 32.3 bits (70), Expect = 2.5
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 273 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK 331
Query: 721 PPGP 710
P GP
Sbjct: 332 PQGP 335
Score = 31.9 bits (69), Expect = 3.4
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 149 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGK 207
Query: 721 PPGP 710
P GP
Sbjct: 208 PQGP 211
>K03208-1|AAA60189.1| 251|Homo sapiens PRB2 protein.
Length = 251
Score = 32.3 bits (70), Expect = 2.5
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 142 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK 200
Query: 721 PPGP 710
P GP
Sbjct: 201 PQGP 204
Score = 31.9 bits (69), Expect = 3.4
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 18 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGK 76
Query: 721 PPGP 710
P GP
Sbjct: 77 PQGP 80
>K02575-1|AAA36502.1| 173|Homo sapiens protein ( Human salivary
proline-rich protein 1 gene, segment 1. ).
Length = 173
Score = 32.3 bits (70), Expect = 2.5
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + ++
Sbjct: 22 PPPQGGNKPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGGKRSRSPRSPPGK 80
Query: 721 PPGP 710
P GP
Sbjct: 81 PQGP 84
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII,
alpha 1 protein.
Length = 1336
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 573 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 621
>BC033715-1|AAH33715.1| 816|Homo sapiens Similar to collagen, type
XVIII, alpha 1 protein.
Length = 816
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 53 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 101
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 753 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 801
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 988 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 1036
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 573 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 621
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 753 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 801
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen
protein.
Length = 1336
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 573 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 621
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen
protein.
Length = 1516
Score = 31.9 bits (69), Expect = 3.4
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PPPRGKRGVXXXGG-PXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
P P G RG G P PP GPP PGP GF GG F
Sbjct: 753 PGPAGARGESGLAGAPGPAGPP--GPPGPPGPPGPGLPAGFDDMEGSGGPF 801
>X07516-1|CAA30394.2| 297|Homo sapiens salivary proline-rich
protein protein.
Length = 297
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 188 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGK 246
Query: 721 PPGP 710
P GP
Sbjct: 247 PQGP 250
>S62928-1|AAB27288.2| 297|Homo sapiens PRB1M protein precursor
protein.
Length = 297
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 188 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGK 246
Query: 721 PPGP 710
P GP
Sbjct: 247 PQGP 250
>S52986-1|AAA13341.2| 331|Homo sapiens basic salivary proline-rich
protein protein.
Length = 331
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 222 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGK 280
Query: 721 PPGP 710
P GP
Sbjct: 281 PQGP 284
>M97220-1|AAB05816.1| 331|Homo sapiens salivary proline-rich
protein protein.
Length = 331
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 222 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGK 280
Query: 721 PPGP 710
P GP
Sbjct: 281 PQGP 284
>K03204-1|AAA60185.1| 331|Homo sapiens PRB1 protein.
Length = 331
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 222 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGK 280
Query: 721 PPGP 710
P GP
Sbjct: 281 PQGP 284
>BC044827-1|AAH44827.1| 338|Homo sapiens PRB2 protein protein.
Length = 338
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 229 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGK 287
Query: 721 PPGP 710
P GP
Sbjct: 288 PQGP 291
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 31.1 bits (67), Expect = 5.9
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 699 LCXHGPGG-GLXXFFXXLNXXXPPPRGKRGVXXXGGPXXXXPPLXGPP-----XXPGPFX 860
L HGP G G + PPPR G+ G P PP GPP PGP
Sbjct: 311 LAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPP-RGPPFGSPMGHPGPMP 369
Query: 861 XXGXTGFXP 887
G G P
Sbjct: 370 PHGMRGPPP 378
>S62941-1|AAB27289.1| 358|Homo sapiens Ps 2 protein.
Length = 358
Score = 30.7 bits (66), Expect = 7.7
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P GG P P G G P GG GPP P P G + +
Sbjct: 249 PPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSQSARAPPGK 307
Query: 721 PPGP 710
P GP
Sbjct: 308 PQGP 311
>M76729-1|AAA59993.1| 1838|Homo sapiens pro-alpha-1 type V collagen
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 1514 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPKG 1555
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 1514 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPRG 1555
>BC008760-1|AAH08760.3| 591|Homo sapiens COL5A1 protein protein.
Length = 591
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 267 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPKG 308
>AL645768-1|CAI17261.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 1514 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPKG 1555
>AL603650-2|CAI39859.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 1514 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPKG 1555
>AL591890-1|CAI15483.1| 1838|Homo sapiens collagen type V alpha 1
protein.
Length = 1838
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 1514 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPKG 1555
>AB209864-1|BAD93101.1| 1792|Homo sapiens Pro-alpha-1 type V collagen
variant protein.
Length = 1792
Score = 30.7 bits (66), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P+G++G+ GP PP GPP PGP G G P G
Sbjct: 1468 PKGEQGITGPSGPIG--PP--GPPGLPGPPGPKGAKGSSGPTGPKG 1509
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,218,940
Number of Sequences: 237096
Number of extensions: 1936019
Number of successful extensions: 9577
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 6507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9353
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -