Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_A16
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 37 0.023
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 34 0.12
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 34 0.16
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.29
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.29
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.29
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 2.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 2.0
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 2.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 30 2.7
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.2
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 28 8.1
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 36.7 bits (81), Expect = 0.023
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Frame = -3
Query: 904 PPXXXGGXNPVXPQXXKGP----GXXGGPXSGGXXXX-GPPXXQTPLFPRGGGXXXFKXX 740
PP G P KGP G GGP GG G P P PRG +K
Sbjct: 155 PPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPG 214
Query: 739 KNXXNPPPGP 710
+ PPGP
Sbjct: 215 QPGRPGPPGP 224
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = -3
Query: 904 PPXXXGGXNPVXPQXXKG-PGXXGGPXSGGXXXXGPPXXQTP---LFPRGGGXXXFKXXK 737
PP GG P P G PG GGP GG GPP + P P G G + +
Sbjct: 143 PPGAVGGPGPKGPPGPPGGPGELGGPGRGG--NRGPPGPRGPPGEAGPDGEGGRPGQAGQ 200
Query: 736 NXXNP-PPG 713
P PPG
Sbjct: 201 TRSAPSPPG 209
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = -3
Query: 904 PPXXXGGXNPVXPQXXKG-PGXXGGPXSGGXXXXGPPXXQTP---LFPRGGGXXXFKXXK 737
PP GG P P G PG GGP GG GPP + P P G G + +
Sbjct: 143 PPGAVGGPGPKGPPGPPGGPGELGGPGRGG--NRGPPGPRGPPGEAGPDGEGGRPGQAGQ 200
Query: 736 NXXNP-PPG 713
P PPG
Sbjct: 201 TRSAPSPPG 209
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPF--XXXGXTGFXPPXXXG 902
PPP GGP PP G P PG + G GF PP G
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGP-FXXXGXTGFXP 887
PPP G G GP P GPP GP TGF P
Sbjct: 411 PPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPP 453
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTP 782
P GG P P PG G P GG GPP P
Sbjct: 403 PGGPGGYGPPPPGGPGAPGSYG-PPQGGPGGFGPPPPGGP 441
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -3
Query: 904 PPXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTP 782
PP G P GPG G P GG GPP P
Sbjct: 413 PPGGPGAPGSYGPPQG-GPGGFGPPPPGGPGAYGPPPTGFP 452
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
PPP G + GGP PP G P P P G G PP G F
Sbjct: 746 PPPGGLPPIS--GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
PPP G + GGP PP G P P P G G PP G F
Sbjct: 746 PPPGGLPPIS--GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGGXF 911
PPP G + GGP PP G P P P G G PP G F
Sbjct: 329 PPPGGLPPIS--GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
PPP G GG PP G P P P TG PP GG
Sbjct: 274 PPPTGSPPPPPAGGSPP--PPRAGSPPPPPPPRGSPPTGSLPPPQAGG 319
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
PPP G GG PP G P P P TG PP GG
Sbjct: 295 PPPTGSPPPPPAGGSPP--PPRAGSPPPPPPPRGSPPTGSLPPPQAGG 340
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
PPP G GG PP G P P P TG PP GG
Sbjct: 280 PPPTGSPPPPPAGGSPP--PPRAGSPPPPPPPRGSPPTGSLPPPQAGG 325
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 750 NXXXPPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXP 887
N P P G +G GP GPP PGP G G P
Sbjct: 240 NDGPPGPPGPKGAPGPDGPPGVDGQ-SGPPGPPGPAGTPGEKGICP 284
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P P G G GP PL GPP PGP G G P G
Sbjct: 137 PCPEGPPGPAGPPGPQGNKGPL-GPPGPPGPEGPNGTAGNKGPAGPPG 183
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = +3
Query: 768 PRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P G+ G GGP PP GP PG G G PP GG
Sbjct: 249 PDGQSGSGSAGGPGPKGPP--GPAGQPGSDGNPGTAG--PPGNPGG 290
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = -3
Query: 904 PPXXXGGX-NPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXX 728
PP G N P GPG G +GG GP P P G
Sbjct: 202 PPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGPAGPAGPDGQSGSGSAGGP 261
Query: 727 NP--PPGP 710
P PPGP
Sbjct: 262 GPKGPPGP 269
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 750 NXXXPPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXP 887
N P P G +G GP GPP PGP G G P
Sbjct: 235 NDGPPGPPGPKGAPGPDGPPGADGQ-SGPPGPPGPAGTPGEKGICP 279
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 750 NXXXPPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXP 887
N P P G +G GP GPP PGP G G P
Sbjct: 235 NDGPPGPPGPKGAPGPDGPPGADGQ-SGPPGPPGPAGTPGEKGICP 279
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P P G G GP PL GPP PGP G G P G
Sbjct: 139 PCPEGPPGPAGPPGPDGNKGPL-GPPGPPGPEGPNGEPGNKGPAGPPG 185
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKG-PGXXGGPXSGG---XXXXGPPXXQTPLFPRG-GGXXXFKXXK 737
P G P P G PG G P +GG GPP P P G G +
Sbjct: 200 PGPAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGPAGPAGEDAYAQPS 259
Query: 736 NXXNP-PPGP 710
P PPGP
Sbjct: 260 PAGTPGPPGP 269
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +3
Query: 762 PPPRGKRGVXXX-GGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXG 902
P P G+ G G P P + GPP PG G G PP G
Sbjct: 182 PGPPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQQGPPG--PPGSNG 227
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PPPRGKRGVXXXGGPXXXXPPLXGPPXXPGPFXXXGXTGFXPPXXXGG 905
P P+G RG GP GPP PGP G G P G
Sbjct: 213 PGPKGPRGTPGPTGPKNFYIT-SGPPGPPGPPGPPGNPGGIGPRGPPG 259
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -3
Query: 904 PPXXXGGXN-PVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGG 761
PP G P P GPG GGP + PP +TP GGG
Sbjct: 279 PPGPPGNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPP--RTPAGGGGGG 325
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/64 (26%), Positives = 20/64 (31%)
Frame = -3
Query: 901 PXXXGGXNPVXPQXXKGPGXXGGPXSGGXXXXGPPXXQTPLFPRGGGXXXFKXXKNXXNP 722
P G P P G GGP PP + P P G ++
Sbjct: 216 PGPTGPPGPRGPPGETGDEGEGGPDGIPMEKKSPPGPRGPPGPAGPDGPQGPEGRSGKQG 275
Query: 721 PPGP 710
PPGP
Sbjct: 276 PPGP 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,128
Number of Sequences: 27780
Number of extensions: 245614
Number of successful extensions: 886
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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