Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A14
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.066
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.20 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.35 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.7  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   7.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   10.0 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.066
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 562 PFXGGXFXPPPPKXXPPXXGGXPPPPP 642
           P  GG   PPPP   P   G  PPPPP
Sbjct: 756 PIMGG---PPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 589 PPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKP 690
           P P   P   G  PPPPP       PP  P   P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 587 PPPQKXXXXXGGGXPPPPP 643
           PPP       G G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 572 GGSXXPPPQKXXXXXGGGXPPPPP 643
           GG   PPP       G   PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
 Frame = +1

Query: 586 PPPPKXXPPXXG----GXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXPPTXRA 735
           PPPP    P         PPP P       PP  P      P      PP   A
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +1

Query: 586 PPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXPP 723
           PP P   PP     PPP         PP  P      P      PP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
 Frame = +1

Query: 586 PPPPKXXPPXXGGXPPPP---PXXXXXXXPPXFPXXKPRXPSXXXSXPPTXRAXXXXLXX 756
           PP P   PP     PP P   P       PP  P    + P    S P         +  
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203

Query: 757 PP 762
           PP
Sbjct: 204 PP 205


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = -2

Query: 722 GGXEXXXEGXRGFXXGXXGGXXXXXXLGGGGGXPPXXGGXXFGGGG 585
           GG     EG  G   G  GG      LGG GG P   GG   G GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGG--LGGFGGGPGGFGGGPGGHGG 270



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/82 (31%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
 Frame = -2

Query: 692 RGFXXGXXGGXXXXXXLGGGGGXPPXXGG-XXFGGGGXKXPPXKG-XXXPPPPXFXXXXX 519
           RG   G  GG       GG GG PP  GG   FGG G +     G       P       
Sbjct: 183 RGHNGGGFGGFG-----GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237

Query: 518 XXXXGGXXXXXXXXGGXGGXXG 453
               GG        GG GG  G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPG 259


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +1

Query: 547 GGXXXPFXGGXFXPPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKP 690
           G    P  G    PPPP    P  G  PPP         PP  P   P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 30.3 bits (65), Expect = 0.35
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 586 PPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXP 699
           PP     PP   G P  PP       PP  P   P  P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 592 PPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXP 720
           PP   PP     PP  P       PP  P   P  P    S P
Sbjct: 415 PPVPTPP---SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
 Frame = +1

Query: 586 PP--PPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXP 720
           PP  PP   P    G P  PP        P  P   P  P    + P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 586 PPPPKXXPPXXGGXPPPPP 642
           PPPP    P     PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 589  PPPKXXPPXXGGXPPPPPXXXXXXXPPXFP 678
            PPP   PP   G P  PP        P  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +1

Query: 586  PPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPS 702
            PPPP    P     PP P        PP      P  P+
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -1

Query: 306 VEGCXPXGQSFX*QX-----PGPKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNAC 142
           + GC   G+S   Q       G  A + F ++ SIV+ A+ ++V   +  + A       
Sbjct: 389 ITGCEGIGESSLIQTICDRREGYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLN 448

Query: 141 TLARQIANKIISSLFILD 88
               ++ NK+ S L++LD
Sbjct: 449 NFFEELKNKLESDLYLLD 466


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 170 KEDNSINTLAESAKKTIEELREKVESAL 253
           KE NSI+ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 140 VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALGP 259
           V A +K+D  +E  S   L      TIE+L+ K E+   P
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPP 167


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = +1

Query: 574 GXFXPPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXPPTXRAXXXXLX 753
           G   PPPP    P     PPPP         P  P      P      PP        + 
Sbjct: 204 GEHMPPPPMHHKPGE-HMPPPPMHHEPGEHMP--PPPMHHEPGEHMPPPPMHHEPGEHMP 260

Query: 754 XPP 762
            PP
Sbjct: 261 PPP 263



 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = +1

Query: 574 GXFXPPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXPPTXRAXXXXLX 753
           G   PPPP    P     PPPP         P  P      P      PP        + 
Sbjct: 243 GEHMPPPPMHHEPGE-HMPPPPMHHEPGEHMP--PPPMHHEPGEHMPPPPMHHEPGEHMP 299

Query: 754 XPP 762
            PP
Sbjct: 300 PPP 302



 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = +1

Query: 574 GXFXPPPPKXXPPXXGGXPPPPPXXXXXXXPPXFPXXKPRXPSXXXSXPPTXRAXXXXLX 753
           G   PPPP    P     PPPP         P  P      P      PP        + 
Sbjct: 282 GEHMPPPPMHHEPGE-HMPPPPMHHEPGEHMP--PPPMHHEPGEHMPPPPMHHEPGEHMP 338

Query: 754 XPP 762
            PP
Sbjct: 339 PPP 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,137
Number of Sequences: 5004
Number of extensions: 36859
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)