Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A13
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   4.2  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   7.4  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   9.7  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 212 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKXYSAGEFKIPIQYRXTRTXRMIKS 36
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR    I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 164 LSARSALLLSPGGNSSRKLRKWDANVRDGLIKAG 265
           L+ +  LLL PGGN++ ++     NV+D +I  G
Sbjct: 396 LARQQGLLLLPGGNNNTRVLP-SLNVKDEVIAKG 428


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 210 EEFPPGLRSSADRAESQHQREDEAQNTYEIHFTEIX*CRRIQNSNTISXDANXKND 43
           ++ PP   S+A        R   +Q+T ++   E+    RIQN +  + D    ND
Sbjct: 118 KDMPPMKSSAAVTERPSMHRSAPSQDTLDLKKQELFAGARIQNDDESTTDTIPHND 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,971
Number of Sequences: 5004
Number of extensions: 27559
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)