Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A12
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    83   5e-17
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    79   1e-15
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.67 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   4.7  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 39/57 (68%), Positives = 46/57 (80%)
 Frame = +2

Query: 92  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 262
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPP
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPP 64



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +3

Query: 276 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 416
           E+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 69  ELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +2

Query: 104 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 262
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PP
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPP 56



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +3

Query: 276 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 416
           E+EYYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 61  ELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 116 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 241
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 250  FSDDNQLCFALSK--SFQSLLVS*AIFSRFHHQSKAGVN*LDGLFLFLCCNHF-GSVNAN 80
            FS+D + C AL      + LLV     +  H +     +  +   + +  +H  G    N
Sbjct: 807  FSEDRKKCCALCGIVGTEGLLVCFKCGTCVHERCYVCDDYAENEQMLVSASHLSGRTTRN 866

Query: 79   ESSPRAQNGKKANLKEFPIVKW 14
             +SP   +GKK+  K+  ++ W
Sbjct: 867  SASPGIVSGKKSYAKKDQVLSW 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,625
Number of Sequences: 5004
Number of extensions: 55596
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)