Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A10
         (1178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    29   6.4  

>Z82083-5|CAB04973.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1010.7 protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 23/84 (27%), Positives = 27/84 (32%)
 Frame = +3

Query: 546 RNGNXGSPNXYGITKFPFDNXXXXXXXXXXPXXPPPPXXXXPXGPRGXSPF*VXGLLXAP 725
           +NG  G P   G   FP             P  P PP    P GP G +     G    P
Sbjct: 113 KNGAPGRPGAPGAPGFPGRPPAVCEEITEPPCTPCPPGEPGPPGPPGDAG--NPGQSGHP 170

Query: 726 XXLXXNTLXXXXGGPTPPXSNXXG 797
                +      G P PP +N  G
Sbjct: 171 GRNGNDGGVGPQGPPGPPGNNGEG 194


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein 20
            protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = -1

Query: 1076 GXKXKRGKGXXQKER-EKXAXGXPGXCGAXVXLXGXXXXGGKXXXPGGPGE 927
            G +   G G  Q E  E    G PG  G    L       G+   PGGPGE
Sbjct: 177  GPRGPPGPGGPQGEAGEDGGAGNPGTPGQVRSLPSPPGEPGQPGEPGGPGE 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,928
Number of Sequences: 27780
Number of extensions: 339999
Number of successful extensions: 1261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)