Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A09
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   9.9  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   9.9  

>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 391 LFKLFYYAKDFECFYKTACYARVYMNQGMFLYAYYIAIIQRSDTASFVLPCSIRSL 558
           L + +YY  +F    +T C   +Y +      ++ +A+I R+D    V+   +R+L
Sbjct: 367 LMEKYYYQAEFNSLVQTHCNDLIY-DPAKITQSHVLAVINRNDLPQPVVEVIVRNL 421


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +1

Query: 91   RGLLPSLSVAPYLNSKRHRVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASK 270
            R L   + VA   +S ++++  A ++   +ILSL+  VN +    EY  +     +EA++
Sbjct: 1797 RNLTTDIKVADVSDSIQNQLIDAMLDA--RILSLYEKVNNLRTSEEYGLIRGKMFVEAAE 1854

Query: 271  DCYTNMKAYE 300
             C+    A +
Sbjct: 1855 LCFIYKSAIQ 1864


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +1

Query: 91   RGLLPSLSVAPYLNSKRHRVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASK 270
            R L   + VA   +S ++++  A ++   +ILSL+  VN +    EY  +     +EA++
Sbjct: 1797 RNLTTDIKVADVSDSIQNQLIDAMLDA--RILSLYEKVNNLRTSEEYGLIRGKMFVEAAE 1854

Query: 271  DCYTNMKAYE 300
             C+    A +
Sbjct: 1855 LCFIYKSAIQ 1864


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 423 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 286
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 423 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 286
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 297 VGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 190
           V F V VA + GLD+E  GDFV+ S   D ++++ +
Sbjct: 8   VFFTVGVAAIYGLDLENAGDFVLPS--GDFIDLISR 41


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 337 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 471
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 337 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 471
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,882
Number of Sequences: 27780
Number of extensions: 323481
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)