Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A08
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   116   3e-27
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   112   7e-26
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   2.0  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  116 bits (280), Expect = 3e-27
 Identities = 52/81 (64%), Positives = 65/81 (80%)
 Frame = +2

Query: 137 VKAVRCTNCARXVPXDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 316
           VK VRC NC+R VP DKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY KL YCVSC
Sbjct: 18  VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77

Query: 317 AIHSKVVXNXSKKDRXIRTPP 379
           AIHS+VV   S++ R IRTPP
Sbjct: 78  AIHSRVVRVRSREGRRIRTPP 98


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  112 bits (269), Expect = 7e-26
 Identities = 49/80 (61%), Positives = 64/80 (80%)
 Frame = +2

Query: 140 KAVRCTNCARXVPXDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCA 319
           K VRC NC+R VP DKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y KL YCVSCA
Sbjct: 19  KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCA 78

Query: 320 IHSKVVXNXSKKDRXIRTPP 379
           IH++VV   S++ R IRTPP
Sbjct: 79  IHARVVRVRSREGRRIRTPP 98


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 226 RFYDVPNHELFDSLVLWHXPRAVCASHSFNVTTSMLGASS 107
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,535
Number of Sequences: 5004
Number of extensions: 31582
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)