Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A07
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.16 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.21 
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.5  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   4.4  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   5.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.9  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 278 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 171
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +2

Query: 650  PPXPPPXSXPAPPXSPFTXGXXPAXPT*LPIPXAPXXDQP 769
            PP PP    P P   P   G   A P  LP   AP    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 659  PPPXSXPAPPXSPFTXGXXPAXPT*LPIPXAPXXDQPXXL 778
            PP  S P PP  P +    P+ P   P+P  P    P  L
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAP---PMPAGPPSAPPPPL 1735


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -3

Query: 380 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 219
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 653 PXPPPXSXPAPPXSPFTXGXXPAXP 727
           P P P   P PP +P   G  P  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 395 LNXXKLEIHNYLQSCFKLNASLEFNDKVY 309
           L    LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 215 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTXRMIE 42
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR    I+
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQ 349


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +2

Query: 650 PPXPP--PXSXPAPPXSPFTXGXXPAXPT*LPIPXAPXXDQP 769
           PP PP  P + P P   P      PA P   P P AP    P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP-APAPAAP 487


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +2

Query: 650  PPXPPPXSXP--APPXSPFTXGXXPAXP 727
            PP PPP + P   PP +  T    PA P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,797
Number of Sequences: 5004
Number of extensions: 32826
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)