Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_A04
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 32 0.53
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 31 1.2
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604 30 2.1
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 30 2.8
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 29 3.7
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 29 3.7
05_03_0618 - 16262826-16263097,16263111-16263183 28 8.6
04_01_0445 + 5812277-5813893 28 8.6
04_01_0443 - 5776275-5777921 28 8.6
03_02_0950 + 12661008-12662312,12662403-12662576 28 8.6
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 32.3 bits (70), Expect = 0.53
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +2
Query: 179 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAXQLWTKDG 349
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T DG
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCT-DG 549
Query: 350 KEIVKSYFPIQFRVIFTEQTVKLINXRDXHALKLID-QQNHNKIAFGDSXDQTQ-QESLL 523
+ + ++ + +N L++ +N+ K A DS QT+ +LL
Sbjct: 550 GDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTK-AVKDSPAQTEIHNTLL 608
Query: 524 EVY 532
E+Y
Sbjct: 609 ELY 611
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +2
Query: 461 QNHNKIAFGDSXDQTQQESLLEVYPPCWKTTEFTSRSCPPEDQQYLKLR 607
QN I+FG S Q QQ+ P F + PPE+QQ L LR
Sbjct: 147 QNQQMISFGSSQQQQQQQPQFGAASPL-----FPPQFLPPEEQQRLLLR 190
>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
Length = 259
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 427 KGPSRPQVDRPTKPQQNCIR*LXRPNPARKSPGSLPPXLENNRVYFK-IXSTRGPTVPEA 603
KG R ++++ KP+ + +P+ + K LPP + + ++FK + T P
Sbjct: 108 KGTKRKKLEKTKKPKDS-----KKPDDSMKPDDKLPPPFKKHSIFFKGLFGTAPAPAPAP 162
Query: 604 PIXRXVLVMT 633
P+ L T
Sbjct: 163 PLLELELSQT 172
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/47 (27%), Positives = 17/47 (36%)
Frame = +3
Query: 741 HPTXPTSVYDTLDERFWAPXXNPVXPLWGXPPENVXPGLSPNPFWXG 881
HP P Y + + P P P +G N P P+W G
Sbjct: 101 HPQQPGPPYGAVPYNYGPPPPQPQDPQYGYATPNPYVQGHPQPYWRG 147
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +2
Query: 344 DGKEIVKSYFPIQFRVIFTE----QTVKLINXRDXHALKLIDQ-QNHNKIAFGDSXDQTQ 508
D ++K+Y P + V + + Q V + + +KL D + N+ FGD D
Sbjct: 401 DLANLMKTYVPGEVHVCYKKILDIQLVASSLESNINQMKLKDVFGSSNEDLFGDDFDDVM 460
Query: 509 QESLLEVYPPCWKTTEFTSRSCPPED 586
+ L E+Y C +FT S ED
Sbjct: 461 LKKLSELYKLCIDLGKFTKTSGVRED 486
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +1
Query: 442 PQVDRPTKPQQNCIR*LXRPNPARKSPGSLPPXLENNRVYFKIXSTRGP 588
PQV P+ P QNC R P+ P S+ P L R K+ ST P
Sbjct: 649 PQVHAPSIPPQNCPRTSVAPHLC--LPRSMAPHLRVLRKISKVHSTNMP 695
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 160 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 74
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>04_01_0445 + 5812277-5813893
Length = 538
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 502 NPARKSPGSLPP 537
NPA KSPGSLPP
Sbjct: 55 NPASKSPGSLPP 66
>04_01_0443 - 5776275-5777921
Length = 548
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 502 NPARKSPGSLPP 537
NPA KSPGSLPP
Sbjct: 55 NPASKSPGSLPP 66
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 164 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 265
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,086,670
Number of Sequences: 37544
Number of extensions: 513083
Number of successful extensions: 1295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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