Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_A01
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.28 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 615 PPXPPPPPPPXXXXXP 662
           PP P PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 794 PXPPPXPPPP 823
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 624  PPPPPPP 644
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 624  PPPPPPP 644
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 615  PPXPPPPP 638
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 618  PXPPPPPP 641
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 625  PPPPPPXP 648
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 800  PPPXPPPP 823
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 618  PXPPPPPP 641
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 619  PXPPPPPP 642
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 725 PXXXPXPXXPXXPXPXXPXXXXXPXPPPXPPP 820
           P     P  P    P  P     P  PP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/28 (32%), Positives = 9/28 (32%)
 Frame = +2

Query: 737 PXPXXPXXPXPXXPXXXXXPXPPPXPPP 820
           P P       P  P     P P   PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,329
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)