Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P24
         (1304 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.94 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   5.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   5.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   6.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   8.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 624 GGGGGGGXXXPPGG 665
           GGG G G   PPGG
Sbjct: 526 GGGSGSGNNQPPGG 539



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 865 PXPPPXXAXPPPPRXXPXPPXP 800
           P PP   A  P P   P P  P
Sbjct: 45  PAPPEEEAASPTPGDVPTPSSP 66


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = -2

Query: 961 PPPXAPXPXPXPPPXXPRXPPPPPXSXPPXPXP 863
           P P      P P P  P  P P P + P    P
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEP 103


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 643 PPPPPPP 623
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 600 PPPPPPP 580
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 22.2 bits (45), Expect = 8.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 175 APPPXPPP 152
           APPP PPP
Sbjct: 730 APPPPPPP 737


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 852 GGGXGXGXGGXEXGGGG 902
           GGG G G  G    GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/41 (26%), Positives = 12/41 (29%)
 Frame = -1

Query: 275 PXXPXXXXPXXPPPPPPXXXXXXPXXXXLXPXXXPPPXPPP 153
           P  P    P    P P            + P   P P PPP
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
 Frame = -2

Query: 946 PXPXPXPPPXXP----RXPPPPPXSXPPXPXPXPPPXXAXPPP 830
           P   P PPP       R  P P    PP   P   P     PP
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPP 201


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 843 PPPPPXASPPXXPPPPP 793
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 185 PXXXPPPXPPPPXXPP 138
           P    PP P PP  PP
Sbjct: 176 PLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.308    0.164    0.558 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,800
Number of Sequences: 336
Number of extensions: 7480
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38535375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)