Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P24
         (1304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.004
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.27 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.83 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   3.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 33.5 bits (73), Expect = 0.004
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = -2

Query: 955 PXAPXPXPXPPPXXPRXPPPPPXSXPPXPXPXPPPXXAXPPPPRXXP 815
           P +  P P P P   + P  P    PP P   PPP      PP   P
Sbjct: 16  PSSGAPGPQPSPH--QSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 31.1 bits (67), Expect = 0.022
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = -3

Query: 240 PPPPPXXXPXXPXX-PPPXPXXXPPPXXPPPXXP 142
           P P P   P  P    PP P   PPP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 29.5 bits (63), Expect = 0.067
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
 Frame = -2

Query: 961 PPPXAPXPXPXP--PPXXPRX--PPPPPXSXPPXPXPXPPP 851
           P   AP P P P   P  P+   PP P    PP   P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 29.5 bits (63), Expect = 0.067
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 904 PPPPPXSXPPXPXPXPPPXXAXPPPPRXXPXPP 806
           P P P   P  P    PP  +  PPP   P  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 27.9 bits (59), Expect = 0.21
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -2

Query: 871 PXPXPPPXXAXPPPPRXXPXPPXPXXXXPAPPXXPP 764
           P P P P  +   P R  P  P        PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 1.1
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
 Frame = -2

Query: 892 PXSXPPXPXPXP-----PPXXAXPPPPRXXPXPPXPXXXXPAPPXXPP 764
           P S  P P P P      P    PP P   P P  P     APP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP---PGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -1

Query: 485 PPPKXPPXXPPPXPXXXXPPXXXXPPPP 402
           P P+  P   P  P    PP     PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -1

Query: 479 PKXPPXXPPPXPXXXXPPXXXXPPPP 402
           P+ P    PP P    PP      PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = -3

Query: 312 PXXPPPAPXXXXXPXPXXXXXXXPPPPPPXXXPXXPXXPPP 190
           P    P P       P       PP P     P  P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 26/116 (22%), Positives = 27/116 (23%), Gaps = 1/116 (0%)
 Frame = -2

Query: 493 PXPPPPKXP-PXXPPPXPXXXXPPXXPXPXXPPXXXXPXPXXXXXPPXPPPXXXXXXXXX 317
           P PP P+      P   P    P   P P  P             P    P         
Sbjct: 53  PRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPP 112

Query: 316 XPPXXXXRXPXXPXPXXXXXXXPXPPPPPPXXXXXXXXXPXXXPXXXAPPPXPPPP 149
            P     R P            P P PP P         P        P P PP P
Sbjct: 113 HP--RLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.83
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 155 GGXXGGGXXXGXGGGXXGXXGXXXGGGGGG 244
           G    GG   G  GG     G   GGGGGG
Sbjct: 23  GSSSAGGVVTGASGGSI-VVGANNGGGGGG 51



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 876 GGXEXGGGGGXRGXXGGGXGXGXGAXGGGGG 968
           G      GG   G  GG    G    GGGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 585 GXXGGXXXXGXXXGGGGGG 641
           G  GG    G   GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 807 GGXGXXRGGGGXAXXGGGXGXGXGGXEXGGGGG 905
           GG G    GG      GG     G    GGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGG-SIVVGANNGGGGGG 51



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 402 GXXGXGXXGGXXXXGXGGGXXGGXFGGGGXG 494
           G  G    GG      GG    G   GGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGG 50


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 922 PXXPRXPPPPPXSXPP 875
           P  P  PPPPP S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 880 PPXPXPXPPPXXAXPP 833
           PP P P PPP  +  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 431 PPXXXXPPPPPXXXXP 384
           PP    PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 250 PXPPPPPP 227
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 861 PXPXXXPPPPPXASPP 814
           P     PPPPP +S P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 612 PXXXPPPPPP 583
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 664  PPGGXXXPPPPPP 626
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 250  PXPPPPPP 227
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 831  PXASPPXXPPPPP 793
            P +  P  PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 643  PPPPPPP 623
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 600  PPPPPPP 580
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 643  PPPPPPP 623
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 600  PPPPPPP 580
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 250  PXPPPPPP 227
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 173  PPPXPPPP 150
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -2

Query: 895 PPXSXPPXPXPXPPPXXAXPPPPRXXPXPP 806
           PP S P  P P P P     P       PP
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIPVRETLILPP 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.164    0.558 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,609
Number of Sequences: 438
Number of extensions: 23043
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44903562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)