Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P23
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    32   0.72 
08_02_1178 + 24958623-24959894                                         30   2.2  
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.9  
09_02_0239 + 6154758-6155039                                           29   5.1  
07_01_1127 + 10456895-10457388,10457488-10458112                       29   5.1  
04_01_0333 - 4391571-4392289,4393048-4393159                           29   5.1  
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653...    28   8.9  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 246  PRAPSTADHPILPSKIDDVKLDPNRRYVRSVTNPENNEASIESSHHT 386
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>08_02_1178 + 24958623-24959894
          Length = 423

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 491 KRRKRWKRQFLSRVPKPQVPCVTVALDRP 405
           +RR RW+   LSR+  P +PC+  + + P
Sbjct: 52  ERRARWELSVLSRLAHPHLPCLLGSAETP 80


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 IPRAPSTADHPILPSKIDDVKLDPNRRYVRS 335
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>09_02_0239 + 6154758-6155039
          Length = 93

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 248 SCAEYCRPSDSSFENRRCEARSKQKVCSQCYQS 346
           SCA  CRP+  S   + C     Q  CSQC  S
Sbjct: 41  SCASSCRPAPISACGKACSLAGPQ-ACSQCQYS 72


>07_01_1127 + 10456895-10457388,10457488-10458112
          Length = 372

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 451 TLERNCLFQRFLRL-TPSQYILIWEIVTDDMHRTIKKNCGIIMSTF*FRGIF 603
           T+++ C    FL+  TP+  I +  +   D  RT++K  G+I  T   R +F
Sbjct: 25  TVQQQCKLSEFLKTETPTFAIAVEPMEASDWLRTVEKKLGLIQCTDQERVVF 76


>04_01_0333 - 4391571-4392289,4393048-4393159
          Length = 276

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -3

Query: 294 RFSKEESDGLQYSAHEEYCHLDTAIAVPGQLVALYVLSGAVSVVACRSA 148
           R +   S G     H   C  D   A P  L    V+SGA +VVACRSA
Sbjct: 166 RLAPSSSGGGGGDCHAVSCAGDVNAACPSDL---RVVSGAGAVVACRSA 211


>01_01_0836 +
           6527902-6528218,6529280-6529632,6529722-6529889,
           6530004-6530051,6530142-6530372,6530435-6530548,
           6530638-6530723
          Length = 438

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 539 MSSVTISHINIYWLGVKRRKRWKRQFLSRVPKPQVPCVTVALDRPVKSNIN 387
           ++ V  S + IY LGV   K W R+     PK       VAL+  + SN N
Sbjct: 359 LAFVNSSSLFIYILGVLHSKSWVRRCDDPQPKAHCRPYAVALNSNLLSNSN 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,916,168
Number of Sequences: 37544
Number of extensions: 416574
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)