Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P22
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.13 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.71 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 333 DNEDDKESDTDSIDEEHLK---DDEVALTDDQKAE 428
           + E+DK+ D DSID   L    DD + + DD K E
Sbjct: 323 EEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKCE 357


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 318 DHNA--SDNEDDKESDTDSIDEEHLKDDEVALTDDQKAERLIMAEELKQAGNNSYKCGEY 491
           DHN   S N      DT+ +++  ++ D     +D+K E  I+ + L+   N+ ++C   
Sbjct: 56  DHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIV-DRLR---NDLFECENK 111

Query: 492 ER 497
           E+
Sbjct: 112 EK 113


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
 Frame = +3

Query: 120 DRLQNTCKTSNEAVINDITRDLETSLNTN---ENTEGYVIQPGTSEEQCFSTETAK---N 281
           D + +    S E  + DI     TS+  +    + E  V   GT     F+T T     +
Sbjct: 103 DSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYD 162

Query: 282 HTELPKDAEFDADHNASDNEDDKESDTDSIDEEHLKDD 395
           HT  P D      H AS +    E   +S+D E + DD
Sbjct: 163 HTWWPYDILNCTIHIASWSHGSNEIKLNSLDTEQILDD 200


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 234 PGTSEEQCFSTETAKNHTEL-PKDAEFDADHNASDNEDDKES 356
           P T      ST  ++ H ++   + +   +HN  DNED  E+
Sbjct: 386 PTTEPSTTTSTTISQKHIKVFVVNKDILHEHNVDDNEDHDEN 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,126
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)