Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_P19
(1118 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.39
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.51
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 8.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.39
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 386 PPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
PP P P PVP PPP PP V PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 328 GXPPPXXXTPGXXGGXAPXPP 390
G PPP PG G P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 410 PXPNXPTPPVPXXXXXXXXXPPPXXPPXVV 499
P P PP P PPP PP V
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.51
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 404 AXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
A P + PTPP P PPP PP P +PP
Sbjct: 1698 APPQMSAPTPPPPPMSVP----PPPSAPPMPAGPPSAPP 1732
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGR 798
PPPP A G G G G G G G G R
Sbjct: 76 PPPPGAEGGPGAGFG-GFPGAGPGGAR 101
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +2
Query: 380 LXPPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPPXL 526
+ PP A P P+ PP+P PPP P V P S P L
Sbjct: 149 IPPPSPASAPPIPSK-APPIPSSL------PPPAQPAAPVKSPPSAPSL 190
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 416 PNXPTPPVPXXXXXXXXXPPPXXPPXVV 499
P P PP P PPP PP V
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYV 33
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Frame = +2
Query: 410 PXPNXPTPPVPXXXXXXXXXPPPXXPPXV----VXXPXSPP 520
P P+ PPVP PPP P V V P PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +2
Query: 338 PPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTPPV-PXXXXXXXXXPPPXXPPXVVXXPXS 514
PP K G + PP P P+ PPV P P PP V +
Sbjct: 1179 PPVPKPAA--GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKA 1236
Query: 515 PP 520
PP
Sbjct: 1237 PP 1238
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GG G G GGRGG
Sbjct: 29 GGGRGGARGGGRGGARGGRGG 49
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +2
Query: 386 PPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSP 517
PP A P+ P PPV P P P P P
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +2
Query: 425 PTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
P PP P PPP V P +PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,184
Number of Sequences: 5004
Number of extensions: 16372
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 593670236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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