Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_P19
(1118 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 39 0.006
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.21
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.21
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.21
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 33 0.37
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.48
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.48
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 33 0.48
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 0.64
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 1.5
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 30 3.4
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 30 3.4
L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family ... 30 3.4
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 30 3.4
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 30 3.4
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 30 3.4
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 30 3.4
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 4.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 4.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 6.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.0
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 6.0
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 6.0
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 6.0
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 6.0
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 6.0
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 6.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.0
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 29 6.0
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 7.9
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 7.9
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 39.1 bits (87), Expect = 0.006
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PPPP G G GGG G G G GG GG
Sbjct: 111 PPPPPPACGGGCGGGGGGCGGGCGGGGGG 139
Score = 35.9 bits (79), Expect = 0.052
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PPPP G G GGG G G GG GG
Sbjct: 56 PPPPACGGGCGGGGGGCGGGGGGCGGGGG 84
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PPPP G G GGG G G G G GG
Sbjct: 54 PPPPPPACGGGCGGGGGGCGGGGGGCGGG 82
Score = 33.9 bits (74), Expect = 0.21
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PPPP A G GGG G G G G GG
Sbjct: 55 PPPPPACGGGCGGGGGGCGGGGGGCGGGG 83
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.21
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +2
Query: 329 GXXPPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXP 508
G PP GG PP P PP P PPP PP P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 509 XSPP 520
PP
Sbjct: 771 PPPP 774
Score = 31.9 bits (69), Expect = 0.85
Identities = 24/89 (26%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Frame = +2
Query: 260 GGGXVXPX--GGXTXXXGXXXSXXGGXXPPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTP 433
GG P GG G G PP G PP P P P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 434 PVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
P P PPP P P PP
Sbjct: 761 P-PPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.21
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +2
Query: 329 GXXPPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXP 508
G PP GG PP P PP P PPP PP P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 509 XSPP 520
PP
Sbjct: 771 PPPP 774
Score = 31.9 bits (69), Expect = 0.85
Identities = 24/89 (26%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Frame = +2
Query: 260 GGGXVXPX--GGXTXXXGXXXSXXGGXXPPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTP 433
GG P GG G G PP G PP P P P
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Query: 434 PVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
P P PPP P P PP
Sbjct: 761 P-PPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.21
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +2
Query: 329 GXXPPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXP 508
G PP GG PP P PP P PPP PP P
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 509 XSPP 520
PP
Sbjct: 354 PPPP 357
Score = 31.9 bits (69), Expect = 0.85
Identities = 24/89 (26%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Frame = +2
Query: 260 GGGXVXPX--GGXTXXXGXXXSXXGGXXPPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTP 433
GG P GG G G PP G PP P P P
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Query: 434 PVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
P P PPP P P PP
Sbjct: 344 P-PPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 33.1 bits (72), Expect = 0.37
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = -3
Query: 519 GGEXGXXTTXGGXXGGGXXXXXXXXXGTGGVGXFGXGXAXXXQGGXRXXPPXXPXXXXXG 340
GG G GG GGG G GG G G G A GG P P G
Sbjct: 99 GGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGG-GGGYASGGSGGFASAPVSLP-APSYG 156
Query: 339 GXXPP 325
G PP
Sbjct: 157 GPPPP 161
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.48
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PPP G G GGG G G GG GG
Sbjct: 74 PPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 930 GGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXG 820
GGG G G G G A PP GG GG G
Sbjct: 56 GGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGG 92
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.48
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 878 PPPPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PPP G G GGG G G GG GG
Sbjct: 74 PPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 930 GGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXG 820
GGG G G G G A PP GG GG G
Sbjct: 56 GGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGG 92
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 32.7 bits (71), Expect = 0.48
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -3
Query: 519 GGEXGXXTTXGGXXGGGXXXXXXXXXGTGGVGXFGXGXAXXXQGG 385
GG G GG GGG G GG+G +G G GG
Sbjct: 163 GGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGG 207
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 519 GGEXGXXTTXGGXXGGGXXXXXXXXXGTGGVGXFGXGXAXXXQGG 385
GG+ G GG GGG G GG G G G GG
Sbjct: 102 GGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGG 146
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -3
Query: 519 GGEXGXXTTXGGXXGGGXXXXXXXXXGTGGVGXFGXGXAXXXQGG 385
GG G GG GGG G GG G G G GG
Sbjct: 107 GGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGG 151
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 32.3 bits (70), Expect = 0.64
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 416 PNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
P P PP P PPP PP ++ P PP
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = +2
Query: 386 PPXXXXAXPXPNXPTPPV--PXXXXXXXXXPPPXXPPXVVXXPXSPPXL 526
PP A P P PP+ P PPP PP P PP +
Sbjct: 33 PPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPM 81
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.1 bits (67), Expect = 1.5
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 404 AXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPPXL 526
A P P P PP+ PPP PP + P PP L
Sbjct: 65 ATPPPPPPPPPL-ISILQQAPPPPPPPPPPTLKAPPPPPIL 104
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 848 GXGGGXGXXGXGXXGGRGG 792
G GGG G G G GGRGG
Sbjct: 672 GGGGGRGGYGGGDRGGRGG 690
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 848 GXGGGXGXXGXGXXGGRGG 792
G GGG G G G GGRGG
Sbjct: 713 GGGGGRGGYGGGDRGGRGG 731
>L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family
protein 1, isoform c protein.
Length = 113
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G G GG GG
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGG 72
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G G GG GG
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGG 72
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G G GG GG
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGG 72
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G G GG GG
Sbjct: 52 GGGGGGGGGGGGGGFGGGNGG 72
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 848 GXGGGXGXXGXGXXGGRGG 792
G GGG G G G GGRGG
Sbjct: 672 GGGGGRGGYGGGDRGGRGG 690
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GG G G G GGRGG
Sbjct: 57 GGGRGGSGGGRGGGSGGGRGG 77
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 519 GGEXGXXTTXGGXXGGGXXXXXXXXXGTGGVGXFGXGXAXXXQGG 385
GG G GG GGG G GG G G G +GG
Sbjct: 86 GGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGG 130
Score = 28.7 bits (61), Expect = 7.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G GGRGG
Sbjct: 86 GGGNGGGGRGGGGGGGGGRGG 106
Score = 28.7 bits (61), Expect = 7.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G GGRGG
Sbjct: 93 GRGGGGGGGGGRGGGGGGRGG 113
Score = 28.7 bits (61), Expect = 7.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G GGRGG
Sbjct: 103 GRGGGGGGRGGGGGGGGGRGG 123
Score = 28.7 bits (61), Expect = 7.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 854 GXGXGGGXGXXGXGXXGGRGG 792
G G GGG G G GGRGG
Sbjct: 110 GRGGGGGGGGGRGGGGGGRGG 130
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -3
Query: 930 GGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXGXWXXG 805
GGG G+G G G G PP GG WGG G G
Sbjct: 130 GGGGGGRGGG-GRGGDGRGPPGSNGGGD---WGGNGGGGRGG 167
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +2
Query: 338 PPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTPP-VPXXXXXXXXXPPPXXPPXVVXXPXS 514
PP G PP A N P PP +P P P PP V
Sbjct: 491 PPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPPVGMANGG 550
Query: 515 PP 520
PP
Sbjct: 551 PP 552
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +2
Query: 338 PPXXKXXGXXGGXXLXPPXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSP 517
PP K PP P P P P P PP PP P +P
Sbjct: 126 PPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPS--PEPRNP 183
Query: 518 P 520
P
Sbjct: 184 P 184
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +2
Query: 425 PTPPVPXXXXXXXXXPPPXXPPXV--VXXPXSPP 520
P PP P PPP PP V P SPP
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP 156
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +2
Query: 389 PXXXXAXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
P P P P PP+ PPP PP + S P
Sbjct: 489 PAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPPALEQEISGP 532
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 936 EXGGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXGXW 814
+ GGG GQ G G G + GG GG G W
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGW 317
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 936 EXGGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXGXW 814
+ GGG GQ G G G + GG GG G W
Sbjct: 240 QQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGW 280
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 936 EXGGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXGXW 814
+ GGG GQ G G G + GG GG G W
Sbjct: 239 QQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGW 279
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 936 EXGGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXGXW 814
+ GGG GQ G G G + GG GG G W
Sbjct: 278 QQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGW 318
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 936 EXGGGXXGQGASXGXRGXGAXPPXRXGGEXEXWWGGXXGXW 814
+ GGG GQ G G G + GG GG G W
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGW 317
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Frame = +2
Query: 386 PPXXXXAXPXPNXPTPP-----VPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
PP P P P PP P PPP P ++ P PP
Sbjct: 1346 PPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPP 1395
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +2
Query: 404 AXPXPNXPTPPVPXXXXXXXXXPPPXXPPXVVXXPXSPP 520
A P P+ PP P PPP PP P P
Sbjct: 62 AIPPPSYAQPPQPYAQSPIAAVPPPPPPPPPQPAPAQAP 100
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -3
Query: 519 GGEXGXXTTXGGXXGGGXXXXXXXXXGTGGVGXFG-XGXAXXXQGGXR 379
GG G GG G G G GG G FG G GG R
Sbjct: 55 GGNNGWNNGGGGFNGNGGFNGGGRGGGRGGNGGFGDNGGLRGGNGGGR 102
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 872 PPXAXAGXGXGGGXGXXGXGXXGGRGG 792
PP G G GGG G G G GG GG
Sbjct: 181 PPSNDFGPG-GGGGGMGGGGGSGGSGG 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,088
Number of Sequences: 27780
Number of extensions: 204423
Number of successful extensions: 1659
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3015558362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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