Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_P17
         (1107 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.69 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   2.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   2.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +1

Query: 811 PPRXXPPNXPXSX--GGPPXPPPHXXP 885
           P R  PPN       GGPP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
 Frame = +3

Query: 783 PPPTPXPXXAP-------PXXPPQXPHXXGXPPXPP 869
           P P P P  +P       P  P Q P   G P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
 Frame = +3

Query: 786 PPTPXPXXAPP----XXPPQXP 839
           PPTP P   PP      PPQ P
Sbjct: 152 PPTPFPRFIPPNAYRFRPPQNP 173


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
 Frame = +3

Query: 786 PPTPXPXXAPP----XXPPQXP 839
           PPTP P   PP      PPQ P
Sbjct: 152 PPTPFPRFIPPNAYRFRPPQNP 173


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
 Frame = +3

Query: 786 PPTPXPXXAPP----XXPPQXP 839
           PPTP P   PP      PPQ P
Sbjct: 390 PPTPFPRFIPPNAYRFRPPQNP 411


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 811 PPRXXPPNXPXSXGGP 858
           PP+  PP  P S  GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.0 bits (42), Expect(2) = 3.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 992  PPPPPXXXSXP 1024
            PPPPP   S P
Sbjct: 343  PPPPPPSSSGP 353



 Score = 20.6 bits (41), Expect(2) = 3.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 881 PQXXXPPPXPPS 916
           P    PPP PPS
Sbjct: 338 PPKPAPPPPPPS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,517
Number of Sequences: 438
Number of extensions: 9256
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37234809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)